Factsheet for TraesCS7A01G227100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817
plastid: 22160430
golgi: 25769308
plastid: 28542341

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G192500.1	Wheat	plastid	99.19	100.0
TraesCS7D01G227300.1	Wheat	plastid	99.19	100.0
EES04597	Sorghum	plastid	91.5	92.24
Zm00001d015385_P001	Maize	plastid	90.69	91.43
Os06t0320500-01	Rice	plastid	87.85	90.04
HORVU7Hr1G046320.2	Barley	plastid	99.19	85.96
Bra003198.1-P	Field mustard	plastid	75.3	77.18
CDX73435	Canola	plastid	75.3	77.18
CDX67613	Canola	plastid	75.3	77.18
CDY07517	Canola	plastid	74.9	76.76
AT3G54890.1	Thale cress	plastid	74.9	76.76
Bra007109.1-P	Field mustard	plastid	74.9	76.76
VIT_13s0019g04140.t01	Wine grape	plastid	75.71	76.64
CDX78277	Canola	plastid	74.49	76.35
GSMUA_Achr2P06350_001	Banana	unclear	74.09	75.93
PGSC0003DMT400059995	Potato	plastid	73.68	73.98
PGSC0003DMT400060313	Potato	plastid	73.28	73.58
Solyc05g056050.2.1	Tomato	plastid	73.28	73.58
Solyc05g056070.2.1	Tomato	plastid	72.87	73.17
KRH08384	Soybean	nucleus, plastid	71.66	71.95
KRH70044	Soybean	mitochondrion, nucleus, plastid	71.66	71.95
Zm00001d024372_P001	Maize	plastid	44.13	45.99
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	38.46	38.78
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	25.1	37.13
TraesCS6A01G094600.1	Wheat	plastid	37.65	36.33
TraesCS2A01G187200.1	Wheat	plastid	36.84	35.41
TraesCS1A01G403300.1	Wheat	plastid	38.06	35.34
TraesCS5A01G454200.1	Wheat	plastid	38.06	35.34
TraesCS1A01G306600.1	Wheat	plastid	37.65	35.09
TraesCS6A01G094300.1	Wheat	plastid	37.65	34.96
TraesCS5A01G454300.1	Wheat	plastid	37.25	34.59
TraesCS2A01G206200.1	Wheat	plastid	39.68	34.27
TraesCS7A01G276400.1	Wheat	plastid	36.03	34.23
TraesCS1A01G403800.1	Wheat	plastid	36.84	34.21
TraesCS6A01G093700.1	Wheat	plastid	36.84	34.21
TraesCS6A01G094100.1	Wheat	plastid	36.84	34.21
TraesCS7A01G238400.1	Wheat	plastid	36.84	34.21
TraesCS5A01G350600.1	Wheat	plastid	36.44	33.96
TraesCS6A01G159800.1	Wheat	plastid	35.63	32.71
TraesCS7A01G237100.1	Wheat	plastid	35.22	32.71
TraesCS6A01G319700.1	Wheat	plastid	33.6	32.68
TraesCS2A01G204800.1	Wheat	plastid	34.82	32.09
TraesCS5A01G322500.1	Wheat	plastid	33.6	31.56
TraesCS5A01G177700.1	Wheat	plastid	39.27	31.29
TraesCS5A01G213000.1	Wheat	plastid	34.41	31.14
TraesCS6A01G094500.1	Wheat	plastid	36.44	29.51
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	37.25	28.13
TraesCS6A01G094400.1	Wheat	plastid	36.84	27.33
TraesCS2A01G342600.1	Wheat	plastid	27.94	27.06
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	30.77	26.39

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637
GO:GO:0009644	GO:GO:0009645	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010114	GO:GO:0010218	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0019904
InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	EnsemblPlantsGene:TraesCS7A01G227100
EnsemblPlants:TraesCS7A01G227100.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7A:-:197300576..197301626

Molecular Weight (calculated)

26667.9 Da

IEP (calculated)

6.119

GRAVY (calculated)

-0.134

Length

247 amino acids

Sequence
(BLAST)

001: MAMASSSGLR SCSAVGVPSL LAPSSRSGRS GLPFCAYATT SGRVTMSAEW FPGQPRPAHL DGSSPGDFGF DPLGLATVPE NFERFKESEI YHCRWAMLCV
101: PGVLVPEALG LGNWVKAQEW AALPDGQATY LGNPVPWGNL PTILAIEFLA IAFAEQQRTM EKDPEKKKYP GGAFDPLGFS KDPAKFEELK LKEIKNGRLA
201: MLAFVGFCVQ QSAYPGTGPL ENLATHLADP WHNNIGDIVI PRNIYGP

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.