CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003198.1-P	Field mustard	plastid	99.17	99.17
CDX67613	Canola	plastid	99.17	99.17
CDX78277	Canola	plastid	98.76	98.76
CDX73435	Canola	plastid	98.34	98.34
AT3G54890.1	Thale cress	plastid	98.34	98.34
GSMUA_Achr6P31940_001	Banana	plastid	84.23	84.23
PGSC0003DMT400060313	Potato	plastid	85.89	84.15
VIT_13s0019g04140.t01	Wine grape	plastid	85.06	84.02
GSMUA_Achr2P06350_001	Banana	unclear	83.82	83.82
Solyc05g056070.2.1	Tomato	plastid	85.48	83.74
Solyc05g056050.2.1	Tomato	plastid	85.06	83.33
PGSC0003DMT400059995	Potato	plastid	85.06	83.33
KRH08384	Soybean	nucleus, plastid	83.82	82.11
KRH70044	Soybean	mitochondrion, nucleus, plastid	83.4	81.71
Os06t0320500-01	Rice	plastid	75.52	75.52
TraesCS7B01G192500.1	Wheat	plastid	76.76	75.51
TraesCS7D01G227300.1	Wheat	plastid	76.76	75.51
EES04597	Sorghum	plastid	76.76	75.51
Zm00001d015385_P001	Maize	plastid	76.35	75.1
TraesCS7A01G227100.1	Wheat	plastid	76.76	74.9
HORVU7Hr1G046320.2	Barley	plastid	75.93	64.21
Zm00001d024372_P001	Maize	plastid	45.23	45.99
CDY30369	Canola	plastid	25.73	40.79
CDY43936	Canola	plastid	39.42	37.11
CDX89120	Canola	plastid	39.0	36.72
CDY26306	Canola	plastid	40.66	36.7
CDX99866	Canola	plastid	40.66	36.7
CDY43676	Canola	plastid	40.66	36.7
CDY66768	Canola	plastid	40.66	36.7
CDY51572	Canola	plastid	39.42	36.68
CDY66572	Canola	cytosol, extracellular, plastid	21.58	36.36
CDX90218	Canola	plastid	40.25	36.33
CDY35271	Canola	plastid	40.25	36.33
CDY17250	Canola	mitochondrion, plastid	24.48	36.2
CDX84647	Canola	plastid	39.83	36.09
CDY17247	Canola	plastid	39.83	36.09
CDX84316	Canola	plastid	39.83	36.09
CDX79562	Canola	plastid	39.83	36.09
CDY43198	Canola	plastid	39.83	35.96
CDX98158	Canola	plastid	39.83	35.96
CDY44667	Canola	plastid	42.74	35.76
CDX99044	Canola	plastid	37.34	35.71
CDY47410	Canola	plastid	37.34	35.71
CDY17248	Canola	plastid	39.42	35.71
CDY53084	Canola	plastid	42.74	35.64
CDY04834	Canola	plastid	41.08	34.49
CDX96677	Canola	plastid	37.34	33.83
CDX83783	Canola	plastid	37.34	33.83
CDX74808	Canola	plastid	37.76	32.97
CDY52238	Canola	plastid	31.95	32.91
CDY20518	Canola	plastid	37.34	32.61
CDY14320	Canola	plastid	31.54	32.48
CDY15050	Canola	plastid	35.68	32.45
CDY43213	Canola	mitochondrion, plastid	34.44	32.17
CDY35042	Canola	plastid	34.44	32.17
CDY33376	Canola	plastid	34.44	32.17
CDX93077	Canola	plastid	35.27	32.08
CDY18320	Canola	plastid	31.12	32.05
CDX96833	Canola	plastid	34.44	32.05
CDX83966	Canola	plastid	30.29	32.02
CDY17055	Canola	mitochondrion, plastid	34.02	31.78
CDY20039	Canola	plastid	34.85	31.7
CDX83726	Canola	plastid	34.85	31.58
CDY49770	Canola	plastid	34.85	31.58
CDY00149	Canola	plastid	34.85	31.58
CDY26347	Canola	plastid	33.2	31.37
CDX81735	Canola	plastid	33.61	31.27
CDY52865	Canola	plastid	33.61	31.27
CDY13732	Canola	plastid	34.44	31.2
CDY03989	Canola	plastid	34.44	31.2
CDY47581	Canola	plastid	34.85	30.77
CDY03835	Canola	plastid	34.85	30.77
CDY12903	Canola	plastid	34.44	30.63
CDY15020	Canola	plastid	34.44	30.63
CDY57375	Canola	plastid	34.44	30.63
CDX83967	Canola	extracellular, vacuole	2.9	30.43
CDY05098	Canola	plastid	34.02	29.29
CDX90755	Canola	plastid	34.02	29.29
CDX84315	Canola	plastid	39.42	28.88
CDY60092	Canola	plastid	33.61	28.83
CDY28778	Canola	plastid	29.05	27.34
CDY45980	Canola	plastid	36.51	27.16
CDY20401	Canola	plastid	36.51	26.91
CDX86864	Canola	plastid	19.5	22.49
CDY61708	Canola	plastid	30.29	20.86

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	GO:A0A078F3B2	UniProt:A0A078F3B2	EnsemblPlants:CDY07517	ProteinID:CDY07517
ProteinID:CDY07517.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00124554001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI0003E6CFAD	SEG:seg

Description

BnaC06g15470DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078F3B2]

Coordinates

chrLK031979:+:241491..243187

Molecular Weight (calculated)

26089.5 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.100

Length

241 amino acids

Sequence
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPENL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA VPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKFEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH KNIGDIVIPF N

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.