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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX83967 Canola extracellular, vacuole 10.09 100.0
CDX96833 Canola plastid 84.65 74.52
Bra016650.1-P Field mustard plastid 82.89 73.54
CDY52865 Canola plastid 82.89 72.97
CDX81735 Canola plastid 82.46 72.59
CDY35042 Canola plastid 82.02 72.48
CDY33376 Canola plastid 81.14 71.71
Solyc01g105050.2.1 Tomato plastid 68.42 60.94
KRH43915 Soybean mitochondrion, nucleus, plastid 69.74 60.92
PGSC0003DMT400032790 Potato plastid 67.98 60.55
KRH10515 Soybean mitochondrion, nucleus, plastid 68.86 60.38
VIT_12s0055g01110.t01 Wine grape plastid 67.54 59.92
PGSC0003DMT400032791 Potato plastid 66.67 59.38
Solyc01g105030.2.1 Tomato plastid 66.23 58.98
CDX67613 Canola plastid 32.02 30.29
CDY07517 Canola plastid 32.02 30.29
CDX73435 Canola plastid 31.58 29.88
CDX78277 Canola plastid 31.58 29.88
CDY18320 Canola plastid 29.39 28.63
CDY14320 Canola plastid 28.95 28.21
CDX74808 Canola plastid 33.77 27.9
CDY51572 Canola plastid 31.58 27.8
CDY52238 Canola plastid 28.51 27.78
CDY43936 Canola plastid 31.14 27.73
CDX89120 Canola plastid 31.14 27.73
CDY20518 Canola plastid 33.33 27.54
CDY04834 Canola plastid 33.33 26.48
CDY44667 Canola plastid 33.33 26.39
CDX96677 Canola plastid 30.7 26.32
CDX83783 Canola plastid 30.7 26.32
CDY53084 Canola plastid 33.33 26.3
CDY66572 Canola cytosol, extracellular, plastid 16.23 25.87
CDY35271 Canola plastid 29.82 25.47
CDY26306 Canola plastid 29.82 25.47
CDY66768 Canola plastid 29.82 25.47
CDX99866 Canola plastid 29.82 25.47
CDY43676 Canola plastid 29.82 25.47
CDX90218 Canola plastid 29.82 25.47
CDY43198 Canola plastid 29.39 25.09
CDX98158 Canola plastid 29.39 25.09
CDY17248 Canola plastid 28.95 24.81
CDX79562 Canola plastid 28.95 24.81
CDX84647 Canola plastid 28.95 24.81
CDY43213 Canola mitochondrion, plastid 28.07 24.81
CDY47410 Canola plastid 27.19 24.6
CDX99044 Canola plastid 27.19 24.6
CDY17247 Canola plastid 28.51 24.44
CDX84316 Canola plastid 28.51 24.44
CDY17055 Canola mitochondrion, plastid 27.63 24.42
CDX93077 Canola plastid 25.88 22.26
CDY15050 Canola plastid 25.88 22.26
CDY03835 Canola plastid 26.32 21.98
CDY47581 Canola plastid 26.32 21.98
CDY20039 Canola plastid 25.44 21.89
CDY00149 Canola plastid 25.44 21.8
CDY03989 Canola plastid 25.44 21.8
CDX83726 Canola plastid 25.44 21.8
CDY49770 Canola plastid 25.44 21.8
CDY13732 Canola plastid 25.44 21.8
CDY15020 Canola plastid 25.88 21.77
CDY17250 Canola mitochondrion, plastid 15.35 21.47
CDX90755 Canola plastid 26.32 21.43
CDY05098 Canola plastid 26.32 21.43
CDY12903 Canola plastid 25.44 21.4
CDY57375 Canola plastid 25.0 21.03
CDY60092 Canola plastid 25.88 21.0
CDY26347 Canola plastid 23.25 20.78
CDY30369 Canola plastid 13.6 20.39
CDY28778 Canola plastid 22.81 20.31
CDX84315 Canola plastid 28.51 19.76
CDY45980 Canola plastid 27.63 19.44
CDY20401 Canola plastid 27.63 19.27
CDX86864 Canola plastid 14.91 16.27
CDY61708 Canola plastid 23.68 15.43
Protein Annotations
Gene3D:1.10.3460.10MapMan:35.1GO:A0A078D3N5EnsemblPlants:CDX83966ProteinID:CDX83966ProteinID:CDX83966.1
InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0005575GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020EnsemblPlantsGene:GSBRNA2T00139749001
InterPro:IPR023329PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF28SUPFAM:SSF103511UniParc:UPI0004EB66D8
SEG:seg:::::
Description
BnaC08g16790D
Coordinates
chrLK031834:+:1466657..1467708
Molecular Weight (calculated)
23889.0 Da
IEP (calculated)
10.616
GRAVY (calculated)
0.066
Length
228 amino acids
Sequence
(BLAST)
001: MATAVSGAVI SGLCSSFLSG GKSSAVALGS GVGTGAARVS RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVPWFEA GADPRAVLVR VTTRDAAASH GPLSGRRRGR GQQRISLYPG DPLVLAGKTR GGVYESDREK LERLKVAEIK
201: HSRLAMLAML VFYFEAGQGK TPLGALGL
Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)
001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
Arabidopsis Description
LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.