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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016522.1-P Field mustard plastid 97.74 97.74
CDX96677 Canola plastid 97.37 97.37
AT1G19150.1 Thale cress plastid 88.35 87.04
VIT_11s0016g00730.t01 Wine grape plastid 75.19 77.22
PGSC0003DMT400007514 Potato plastid 75.19 76.92
Solyc12g009200.1.1 Tomato nucleus, plastid 74.81 76.54
KRH37524 Soybean plastid 73.31 75.0
KRH12566 Soybean plastid 72.56 74.23
GSMUA_Achr9P18200_001 Banana plastid 35.34 68.61
Os09t0439500-01 Rice plastid 68.05 68.56
TraesCS5B01G210800.2 Wheat cytosol, plastid 60.9 68.07
Zm00001d005814_P002 Maize plastid 66.92 65.68
KXG35708 Sorghum plastid 66.54 64.36
TraesCS5A01G213000.1 Wheat plastid 65.79 64.1
TraesCS5D01G219100.1 Wheat plastid 65.79 63.64
HORVU5Hr1G062240.1 Barley plastid 66.17 61.75
CDY43936 Canola plastid 54.51 56.64
CDX89120 Canola plastid 54.14 56.25
CDY51572 Canola plastid 54.14 55.6
CDY47410 Canola plastid 39.85 42.06
CDX99044 Canola plastid 39.85 42.06
CDX67613 Canola plastid 33.83 37.34
CDY07517 Canola plastid 33.83 37.34
CDX78277 Canola plastid 33.83 37.34
CDX73435 Canola plastid 33.83 37.34
CDY17055 Canola mitochondrion, plastid 35.71 36.82
CDY43213 Canola mitochondrion, plastid 35.34 36.43
CDY12903 Canola plastid 36.84 36.16
CDY03835 Canola plastid 36.84 35.9
CDY47581 Canola plastid 36.84 35.9
CDY15020 Canola plastid 36.47 35.79
CDY57375 Canola plastid 36.47 35.79
CDY26347 Canola plastid 34.21 35.69
CDY33376 Canola plastid 34.59 35.66
CDY35042 Canola plastid 34.21 35.27
CDX96833 Canola plastid 34.21 35.14
CDX81735 Canola plastid 34.21 35.14
CDX83967 Canola extracellular, vacuole 3.01 34.78
CDY52865 Canola plastid 33.83 34.75
CDY30369 Canola plastid 19.55 34.21
CDY66572 Canola cytosol, extracellular, plastid 18.05 33.57
CDX84316 Canola plastid 33.46 33.46
CDY17247 Canola plastid 33.46 33.46
CDX79562 Canola plastid 33.46 33.46
CDX84647 Canola plastid 33.08 33.08
CDY17248 Canola plastid 33.08 33.08
CDY66768 Canola plastid 33.08 32.96
CDY26306 Canola plastid 33.08 32.96
CDX90218 Canola plastid 33.08 32.96
CDX99866 Canola plastid 33.08 32.96
CDY35271 Canola plastid 33.08 32.96
CDY43676 Canola plastid 33.08 32.96
CDY43198 Canola plastid 32.71 32.58
CDX98158 Canola plastid 32.71 32.58
CDX93077 Canola plastid 31.58 31.7
CDY15050 Canola plastid 31.58 31.7
CDY17250 Canola mitochondrion, plastid 19.17 31.29
CDY00149 Canola plastid 31.2 31.2
CDY20039 Canola plastid 30.83 30.94
CDY13732 Canola plastid 30.83 30.83
CDY49770 Canola plastid 30.83 30.83
CDX83726 Canola plastid 30.83 30.83
CDX83966 Canola plastid 26.32 30.7
CDY03989 Canola plastid 30.45 30.45
CDY04834 Canola plastid 32.71 30.31
CDY53084 Canola plastid 32.71 30.1
CDX74808 Canola plastid 31.2 30.07
CDY20518 Canola plastid 31.2 30.07
CDY52238 Canola plastid 26.32 29.91
CDY14320 Canola plastid 26.32 29.91
CDY18320 Canola plastid 26.32 29.91
CDY44667 Canola plastid 32.33 29.86
CDX90755 Canola plastid 30.45 28.93
CDY05098 Canola plastid 30.08 28.57
CDY60092 Canola plastid 30.08 28.47
CDX84315 Canola plastid 33.46 27.05
CDX86864 Canola plastid 20.3 25.84
CDY28778 Canola plastid 24.06 25.0
CDY45980 Canola plastid 30.08 24.69
CDY20401 Canola plastid 30.08 24.46
CDY61708 Canola plastid 22.18 16.86
Protein Annotations
MapMan:1.1.4.1.6Gene3D:1.10.3460.10GO:A0A078D8W5EnsemblPlants:CDX83783ProteinID:CDX83783ProteinID:CDX83783.1
InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0005575GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020EnsemblPlantsGene:GSBRNA2T00139530001
InterPro:IPR023329PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF5SUPFAM:SSF103511SignalP:SignalP-noTM
UniParc:UPI0004EE95D7SEG:seg::::
Description
BnaC08g18620D
Coordinates
chrLK031834:-:437451..438674
Molecular Weight (calculated)
29330.0 Da
IEP (calculated)
5.096
GRAVY (calculated)
-0.080
Length
266 amino acids
Sequence
(BLAST)
001: MALAIASALT STTLALSTSR VQNARGAFSS RVGGRTSERL VVVRAGKEVS SVCEPLTPDR PMWFPGTSPP EWLDGSLPGD FGFDPLGLGS DPETLRWFAQ
101: AELIHSRWAM LAVTGILIPE CLERLGFIEN YSWYDAGSRE YFADSTTLFV VQLVLMGWAE GRRWADFIKP GSVDIEPQYP HKVNPKPDVG YPGGLWFDPM
201: MWGRGSPDPV MVMRTKEIKN GRLAMLAFVG FCFQANYSAS QDPIENLMAH LADPGHCNVF SAFTSQ
Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)
001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH
Arabidopsis Description
LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.