CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84316	Canola	plastid	99.62	99.62
Bra005425.1-P	Field mustard	plastid	99.62	99.62
CDY17248	Canola	plastid	99.25	99.25
CDX84647	Canola	plastid	98.5	98.5
CDX79562	Canola	plastid	98.12	98.12
CDY30369	Canola	plastid	55.26	96.71
CDY35271	Canola	plastid	96.99	96.63
CDX90218	Canola	plastid	96.99	96.63
CDY66768	Canola	plastid	96.62	96.25
CDY43676	Canola	plastid	96.62	96.25
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	48.12	96.24
CDY26306	Canola	plastid	96.24	95.88
CDY43198	Canola	plastid	95.11	94.76
CDX99866	Canola	plastid	95.11	94.76
CDX98158	Canola	plastid	93.98	93.63
CDY17250	Canola	mitochondrion, plastid	49.62	80.98
CDX84315	Canola	plastid	97.74	79.03
CDY15050	Canola	plastid	75.19	75.47
CDX93077	Canola	plastid	75.19	75.47
CDY20039	Canola	plastid	74.44	74.72
CDY49770	Canola	plastid	74.44	74.44
CDY13732	Canola	plastid	74.44	74.44
CDY03989	Canola	plastid	74.06	74.06
CDY00149	Canola	plastid	74.06	74.06
CDX83726	Canola	plastid	73.68	73.68
CDY66572	Canola	cytosol, extracellular, plastid	37.59	69.93
CDY14320	Canola	plastid	59.02	67.09
CDY52238	Canola	plastid	59.02	67.09
CDY18320	Canola	plastid	58.65	66.67
CDY28778	Canola	plastid	58.27	60.55
CDY05098	Canola	plastid	42.48	40.36
CDX73435	Canola	plastid	36.47	40.25
CDX90755	Canola	plastid	42.11	40.0
CDY07517	Canola	plastid	36.09	39.83
CDX78277	Canola	plastid	36.09	39.83
CDX67613	Canola	plastid	36.09	39.83
CDY60092	Canola	plastid	41.73	39.5
CDX83967	Canola	extracellular, vacuole	3.38	39.13
CDY43936	Canola	plastid	35.34	36.72
CDX89120	Canola	plastid	34.96	36.33
CDY51572	Canola	plastid	34.21	35.14
CDY45980	Canola	plastid	41.73	34.26
CDY44667	Canola	plastid	36.84	34.03
CDY53084	Canola	plastid	36.84	33.91
CDY20401	Canola	plastid	41.35	33.64
CDX96677	Canola	plastid	33.46	33.46
CDX83783	Canola	plastid	33.46	33.46
CDY04834	Canola	plastid	36.09	33.45
CDY57375	Canola	plastid	33.83	33.21
CDY12903	Canola	plastid	33.83	33.21
CDX86864	Canola	plastid	25.94	33.01
CDY15020	Canola	plastid	33.46	32.84
CDY03835	Canola	plastid	33.08	32.23
CDY47581	Canola	plastid	33.08	32.23
CDY47410	Canola	plastid	30.45	32.14
CDX99044	Canola	plastid	30.45	32.14
CDX74808	Canola	plastid	33.08	31.88
CDY26347	Canola	plastid	30.45	31.76
CDX81735	Canola	plastid	30.45	31.27
CDY20518	Canola	plastid	32.33	31.16
CDY52865	Canola	plastid	30.08	30.89
CDX96833	Canola	plastid	29.7	30.5
CDY35042	Canola	plastid	29.32	30.23
CDY43213	Canola	mitochondrion, plastid	29.32	30.23
CDY33376	Canola	plastid	29.32	30.23
CDY17055	Canola	mitochondrion, plastid	28.95	29.84
CDX83966	Canola	plastid	24.44	28.51
CDY61708	Canola	plastid	27.82	21.14

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	GO:A0A078FWX6	UniProt:A0A078FWX6	EnsemblPlants:CDY17247	ProteinID:CDY17247
ProteinID:CDY17247.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00095325001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF55	SUPFAM:SSF103511	UniParc:UPI0004EF2F1F	:

Description

BnaA05g09410DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078FWX6]

Coordinates

chrLK032071:-:637237..638316

Molecular Weight (calculated)

28169.6 Da

IEP (calculated)

4.925

GRAVY (calculated)

0.045

Length

266 amino acids

Sequence
(BLAST)

001: MAASTMALSS PALAGKAVKL SPGASEVFGT ARVTMRKTVK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: AADPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK

Best Arabidopsis Sequence Match ( AT2G34430.1 )
(BLAST)

001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK

Arabidopsis Description

LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.