CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008265.1-P	Field mustard	plastid	96.64	97.53
CDY45980	Canola	plastid	96.33	97.22
AT1G76570.1	Thale cress	plastid	88.38	88.38
VIT_18s0122g00430.t01	Wine grape	plastid	76.15	75.23
PGSC0003DMT400025715	Potato	plastid	72.78	74.84
KRH06016	Soybean	plastid	73.09	71.99
GSMUA_Achr9P27480_001	Banana	mitochondrion	70.64	71.74
EER96508	Sorghum	plastid	68.81	71.66
TraesCS5A01G177700.1	Wheat	plastid	67.58	71.29
TraesCS5B01G175000.1	Wheat	plastid	66.97	70.87
TraesCS5D01G182000.1	Wheat	plastid	66.67	70.32
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	66.67	70.32
Solyc04g082920.2.1	Tomato	plastid	46.79	70.18
Zm00001d020002_P002	Maize	plastid	67.28	69.84
Os09t0296800-01	Rice	plastid	67.28	68.54
KRH17548	Soybean	cytosol, peroxisome, plastid	33.64	54.46
CDY30369	Canola	plastid	21.41	46.05
CDX83967	Canola	extracellular, vacuole	3.06	43.48
CDX99866	Canola	plastid	34.25	41.95
CDX84647	Canola	plastid	33.95	41.73
CDX79562	Canola	plastid	33.95	41.73
CDY17250	Canola	mitochondrion, plastid	20.8	41.72
CDY43198	Canola	plastid	33.95	41.57
CDY35271	Canola	plastid	33.95	41.57
CDY43676	Canola	plastid	33.95	41.57
CDY66768	Canola	plastid	33.95	41.57
CDX90218	Canola	plastid	33.95	41.57
CDY26306	Canola	plastid	33.95	41.57
CDY20039	Canola	plastid	33.64	41.51
CDY17247	Canola	plastid	33.64	41.35
CDX83726	Canola	plastid	33.64	41.35
CDY13732	Canola	plastid	33.64	41.35
CDY49770	Canola	plastid	33.64	41.35
CDY03989	Canola	plastid	33.64	41.35
CDX84316	Canola	plastid	33.64	41.35
CDY00149	Canola	plastid	33.64	41.35
CDX98158	Canola	plastid	33.64	41.2
CDY17248	Canola	plastid	33.33	40.98
CDY15050	Canola	plastid	33.03	40.75
CDX93077	Canola	plastid	33.03	40.75
CDY14320	Canola	plastid	29.05	40.6
CDY52238	Canola	plastid	29.05	40.6
CDY66572	Canola	cytosol, extracellular, plastid	17.74	40.56
CDY18320	Canola	plastid	28.75	40.17
CDY60092	Canola	plastid	32.72	38.08
CDY05098	Canola	plastid	32.42	37.86
CDX90755	Canola	plastid	32.42	37.86
CDY07517	Canola	plastid	26.91	36.51
CDX78277	Canola	plastid	26.91	36.51
CDX67613	Canola	plastid	26.91	36.51
CDX73435	Canola	plastid	26.61	36.1
CDY28778	Canola	plastid	26.91	34.38
CDX84315	Canola	plastid	33.64	33.43
CDY17055	Canola	mitochondrion, plastid	25.99	32.95
CDY43213	Canola	mitochondrion, plastid	25.69	32.56
CDY43936	Canola	plastid	25.08	32.03
CDX89120	Canola	plastid	25.08	32.03
CDX99044	Canola	plastid	24.46	31.75
CDY47410	Canola	plastid	24.46	31.75
CDY04834	Canola	plastid	27.83	31.71
CDY51572	Canola	plastid	25.08	31.66
CDY44667	Canola	plastid	27.83	31.6
CDX86864	Canola	plastid	20.18	31.58
CDY53084	Canola	plastid	27.83	31.49
CDY03835	Canola	plastid	25.69	30.77
CDY47581	Canola	plastid	25.69	30.77
CDY57375	Canola	plastid	25.38	30.63
CDY12903	Canola	plastid	25.38	30.63
CDY15020	Canola	plastid	25.08	30.26
CDX83783	Canola	plastid	24.46	30.08
CDX96677	Canola	plastid	24.16	29.7
CDY26347	Canola	plastid	22.94	29.41
CDY20518	Canola	plastid	24.77	29.35
CDX74808	Canola	plastid	24.77	29.35
CDX96833	Canola	plastid	22.63	28.57
CDY33376	Canola	plastid	22.32	28.29
CDY35042	Canola	plastid	22.32	28.29
CDX83966	Canola	plastid	19.27	27.63
CDX81735	Canola	plastid	21.71	27.41
CDY52865	Canola	plastid	21.71	27.41
CDY61708	Canola	plastid	20.49	19.14

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	GO:A0A078G4P7	UniProt:A0A078G4P7	EnsemblPlants:CDY20401	ProteinID:CDY20401
ProteinID:CDY20401.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00012444001
InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511	UniParc:UPI0004EDCDE4
SEG:seg	:	:	:	:	:

Description

BnaC02g24150DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078G4P7]

Coordinates

chrLK032107:-:399036..402577

Molecular Weight (calculated)

36329.0 Da

IEP (calculated)

7.963

GRAVY (calculated)

-0.007

Length

327 amino acids

Sequence
(BLAST)

001: MALFPDMLSL SSTCSSFHSL PRGLLPEPPR RRLAVKRPRS ICRASWQELA GVLVFSAIPF TAVKVIANSS LGESLRRRLE EKKKEAVENA TRFNAKAQKA
101: RADSKWYGQE RPRWFGPIPY DYPTYLTGEL PGDYGFDVAG LGKDRLNFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGA FHFVEPVWWR VGYSKLQGET
201: LDYLGIPGLH VAGSQGVIVI AICQALLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSQDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPVHNN LLAILQI

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.