Factsheet for Solyc04g082920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
peroxisome 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025715	Potato	plastid	98.17	67.3
VIT_18s0122g00430.t01	Wine grape	plastid	75.23	49.55
Bra008265.1-P	Field mustard	plastid	71.56	48.15
CDY45980	Canola	plastid	71.1	47.84
KRH06016	Soybean	plastid	72.02	47.29
AT1G76570.1	Thale cress	plastid	70.64	47.09
CDY20401	Canola	plastid	70.18	46.79
GSMUA_Achr9P27480_001	Banana	mitochondrion	66.06	44.72
EER96508	Sorghum	plastid	64.22	44.59
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	61.47	43.23
TraesCS5A01G177700.1	Wheat	plastid	61.47	43.23
Zm00001d020002_P002	Maize	plastid	62.39	43.17
TraesCS5B01G175000.1	Wheat	plastid	61.01	43.04
TraesCS5D01G182000.1	Wheat	plastid	61.01	42.9
Os09t0296800-01	Rice	plastid	60.55	41.12
KRH17548	Soybean	cytosol, peroxisome, plastid	37.16	40.1
Solyc08g067330.1.1	Tomato	plastid	16.97	37.76
Solyc02g071000.1.1	Tomato	nucleus, plastid	30.28	24.91
Solyc03g005780.1.1	Tomato	plastid	30.28	24.72
Solyc03g005770.1.1	Tomato	nucleus	29.82	24.34
Solyc03g005760.1.1	Tomato	nucleus	29.82	24.34
Solyc02g070940.1.1	Tomato	plastid	29.36	24.15
Solyc02g071010.1.1	Tomato	plastid	29.36	24.15
Solyc02g070950.1.1	Tomato	plastid	29.36	24.15
Solyc02g070970.1.1	Tomato	plastid	29.36	24.15
Solyc02g070980.1.1	Tomato	nucleus, plastid	29.36	24.15
Solyc02g071030.1.1	Tomato	plastid	29.36	24.15
Solyc02g070990.1.1	Tomato	plastid	29.36	24.15
Solyc12g011450.1.1	Tomato	plastid	27.52	22.64
Solyc07g047850.2.1	Tomato	plastid	27.52	22.64
Solyc12g006140.1.1	Tomato	plastid	27.06	22.26
Solyc07g063600.2.1	Tomato	nucleus	26.15	21.76
Solyc06g063370.2.1	Tomato	plastid	26.61	20.28
Solyc09g014520.2.1	Tomato	plastid	23.85	18.25
Solyc12g009200.1.1	Tomato	nucleus, plastid	21.56	18.08
Solyc05g056070.2.1	Tomato	plastid	20.18	17.89
Solyc05g056050.2.1	Tomato	plastid	19.72	17.48
Solyc01g105050.2.1	Tomato	plastid	19.72	16.8
Solyc10g006230.2.1	Tomato	plastid	20.64	16.67
Solyc01g105030.2.1	Tomato	plastid	19.27	16.41
Solyc06g069730.2.1	Tomato	plastid	18.81	16.4
Solyc12g011280.1.1	Tomato	plastid	19.72	15.75
Solyc03g115900.2.1	Tomato	plastid	17.89	15.54
Solyc10g007690.2.1	Tomato	plastid	19.27	15.38
Solyc07g022900.2.1	Tomato	plastid	18.35	15.27
Solyc08g067320.1.1	Tomato	plastid	0.46	1.1

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010218	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	InterPro:IPR023329	UniProt:K4BW18	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24
SUPFAM:SSF103511	EnsemblPlantsGene:Solyc04g082920.2	EnsemblPlants:Solyc04g082920.2.1	UniParc:UPI0002766A48	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4BW18]

Coordinates

chr4:+:66402394..66411036

Molecular Weight (calculated)

24332.5 Da

IEP (calculated)

8.615

GRAVY (calculated)

0.052

Length

218 amino acids

Sequence
(BLAST)

001: MTLLQLPHLS SSVPKDQRLY RNASALDPFS RHKASWQELA GVLVFSAIPF TAVKAIANST FGETLRKRLE ERKKVAVENS AKFKALALMA RNDSIWYGED
101: RPRWLGPISY DYPAYLNGEL PGDYGFDICG LSKDPVALQN YFNYEILHGR WAMLAALGAL IPELLNLTGL FQFVEPVWWR VGYSKLKGDT LDYLGIPGLH
201: LAGSQGVIVI AICQALLM

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.