Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400010985 | Potato | plastid | 99.25 | 99.25 |
Solyc07g047850.2.1 | Tomato | plastid | 94.34 | 94.34 |
VIT_12s0057g00630.t01 | Wine grape | plastid | 92.08 | 92.08 |
KRH74003 | Soybean | nucleus, plastid | 90.19 | 90.19 |
GSMUA_Achr4P33040_001 | Banana | plastid, unclear | 89.81 | 90.15 |
KRH14122 | Soybean | nucleus, plastid | 89.81 | 89.81 |
Bra039070.1-P | Field mustard | plastid | 88.68 | 88.68 |
CDY15050 | Canola | plastid | 88.68 | 88.68 |
CDY20039 | Canola | plastid | 88.68 | 88.68 |
CDY13732 | Canola | plastid | 88.68 | 88.35 |
CDY49770 | Canola | plastid | 88.68 | 88.35 |
Bra025297.1-P | Field mustard | plastid | 88.68 | 88.35 |
CDX93077 | Canola | plastid | 88.3 | 88.3 |
Bra013183.1-P | Field mustard | plastid | 88.3 | 88.3 |
CDY00149 | Canola | plastid | 88.3 | 87.97 |
CDY03989 | Canola | plastid | 88.3 | 87.97 |
AT2G05070.1 | Thale cress | plastid | 87.92 | 87.92 |
CDX83726 | Canola | plastid | 87.92 | 87.59 |
Os03t0592500-01 | Rice | extracellular | 86.79 | 87.45 |
Zm00001d033132_P001 | Maize | plastid | 84.53 | 86.15 |
Zm00001d033136_P001 | Maize | plastid | 84.53 | 86.15 |
EER93861 | Sorghum | plastid | 84.91 | 85.88 |
Bra033022.1-P | Field mustard | plastid | 83.02 | 85.27 |
TraesCS5D01G329200.1 | Wheat | plastid | 83.02 | 83.65 |
TraesCS5B01G322900.1 | Wheat | plastid | 83.02 | 83.65 |
TraesCS5A01G322500.1 | Wheat | plastid | 83.02 | 83.65 |
Solyc08g067320.1.1 | Tomato | plastid | 28.68 | 83.52 |
AT3G27690.2 | Thale cress | golgi, plastid | 88.68 | 78.86 |
Solyc02g070940.1.1 | Tomato | plastid | 78.11 | 78.11 |
Solyc02g070950.1.1 | Tomato | plastid | 78.11 | 78.11 |
Solyc02g070970.1.1 | Tomato | plastid | 78.11 | 78.11 |
Solyc02g071010.1.1 | Tomato | plastid | 78.11 | 78.11 |
Solyc02g071030.1.1 | Tomato | plastid | 78.11 | 78.11 |
Solyc03g005780.1.1 | Tomato | plastid | 78.49 | 77.9 |
Solyc02g070980.1.1 | Tomato | nucleus, plastid | 77.74 | 77.74 |
Solyc03g005760.1.1 | Tomato | nucleus | 78.11 | 77.53 |
Solyc02g071000.1.1 | Tomato | nucleus, plastid | 77.36 | 77.36 |
Solyc02g070990.1.1 | Tomato | plastid | 77.36 | 77.36 |
Solyc03g005770.1.1 | Tomato | nucleus | 77.74 | 77.15 |
Zm00001d013766_P001 | Maize | plastid | 38.87 | 71.53 |
Solyc12g011450.1.1 | Tomato | plastid | 69.43 | 69.43 |
Solyc07g063600.2.1 | Tomato | nucleus | 68.3 | 69.08 |
AT2G05100.2 | Thale cress | plastid | 81.13 | 67.82 |
Solyc08g067330.1.1 | Tomato | plastid | 24.91 | 67.35 |
HORVU5Hr1G082420.1 | Barley | plastid | 83.4 | 64.43 |
Solyc06g063370.2.1 | Tomato | plastid | 42.26 | 39.16 |
Solyc05g056070.2.1 | Tomato | plastid | 33.21 | 35.77 |
Solyc05g056050.2.1 | Tomato | plastid | 33.21 | 35.77 |
Solyc10g007690.2.1 | Tomato | plastid | 34.34 | 33.33 |
Solyc12g009200.1.1 | Tomato | nucleus, plastid | 32.45 | 33.08 |
Solyc12g011280.1.1 | Tomato | plastid | 33.21 | 32.23 |
Solyc10g006230.2.1 | Tomato | plastid | 32.83 | 32.22 |
Solyc09g014520.2.1 | Tomato | plastid | 33.96 | 31.58 |
Solyc06g069730.2.1 | Tomato | plastid | 29.06 | 30.8 |
Solyc03g115900.2.1 | Tomato | plastid | 28.3 | 29.88 |
Solyc07g022900.2.1 | Tomato | plastid | 26.79 | 27.1 |
Solyc04g082920.2.1 | Tomato | plastid | 22.26 | 27.06 |
Solyc01g105050.2.1 | Tomato | plastid | 25.66 | 26.56 |
Solyc01g105030.2.1 | Tomato | plastid | 25.66 | 26.56 |
Protein Annotations
MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009522 |
GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009765 |
GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0031409 | GO:GO:0046872 |
InterPro:IPR023329 | UniProt:K4DBF1 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF33 | SUPFAM:SSF103511 |
EnsemblPlantsGene:Solyc12g006140.1 | EnsemblPlants:Solyc12g006140.1.1 | UniParc:UPI000276A635 | : | : | : |
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4DBF1]
Coordinates
chr12:-:693217..694582
Molecular Weight (calculated)
28700.1 Da
IEP (calculated)
5.115
GRAVY (calculated)
-0.078
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSAIQHSA FAGQTALKSQ NEFIRKIGSF EGGRVTMRRT VKSAPQSIWY GEDRPKYLGP FSEQTPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPEILSK NGVTFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WASQVVLMGF VEGYRVGGGP LGEGLDKIYP GGAFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPIE NLSDHIADPV ANNAWAYATN FVPGK
101: HCRWAMLGAL GCVFPEILSK NGVTFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WASQVVLMGF VEGYRVGGGP LGEGLDKIYP GGAFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPIE NLSDHIADPV ANNAWAYATN FVPGK
001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK
Arabidopsis Description
LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]
SUBAcon: [golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.