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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400010985 Potato plastid 99.25 99.25
Solyc07g047850.2.1 Tomato plastid 94.34 94.34
VIT_12s0057g00630.t01 Wine grape plastid 92.08 92.08
KRH74003 Soybean nucleus, plastid 90.19 90.19
GSMUA_Achr4P33040_001 Banana plastid, unclear 89.81 90.15
KRH14122 Soybean nucleus, plastid 89.81 89.81
Bra039070.1-P Field mustard plastid 88.68 88.68
CDY15050 Canola plastid 88.68 88.68
CDY20039 Canola plastid 88.68 88.68
CDY13732 Canola plastid 88.68 88.35
CDY49770 Canola plastid 88.68 88.35
Bra025297.1-P Field mustard plastid 88.68 88.35
CDX93077 Canola plastid 88.3 88.3
Bra013183.1-P Field mustard plastid 88.3 88.3
CDY00149 Canola plastid 88.3 87.97
CDY03989 Canola plastid 88.3 87.97
AT2G05070.1 Thale cress plastid 87.92 87.92
CDX83726 Canola plastid 87.92 87.59
Os03t0592500-01 Rice extracellular 86.79 87.45
Zm00001d033132_P001 Maize plastid 84.53 86.15
Zm00001d033136_P001 Maize plastid 84.53 86.15
EER93861 Sorghum plastid 84.91 85.88
Bra033022.1-P Field mustard plastid 83.02 85.27
TraesCS5D01G329200.1 Wheat plastid 83.02 83.65
TraesCS5B01G322900.1 Wheat plastid 83.02 83.65
TraesCS5A01G322500.1 Wheat plastid 83.02 83.65
Solyc08g067320.1.1 Tomato plastid 28.68 83.52
AT3G27690.2 Thale cress golgi, plastid 88.68 78.86
Solyc02g070940.1.1 Tomato plastid 78.11 78.11
Solyc02g070950.1.1 Tomato plastid 78.11 78.11
Solyc02g070970.1.1 Tomato plastid 78.11 78.11
Solyc02g071010.1.1 Tomato plastid 78.11 78.11
Solyc02g071030.1.1 Tomato plastid 78.11 78.11
Solyc03g005780.1.1 Tomato plastid 78.49 77.9
Solyc02g070980.1.1 Tomato nucleus, plastid 77.74 77.74
Solyc03g005760.1.1 Tomato nucleus 78.11 77.53
Solyc02g071000.1.1 Tomato nucleus, plastid 77.36 77.36
Solyc02g070990.1.1 Tomato plastid 77.36 77.36
Solyc03g005770.1.1 Tomato nucleus 77.74 77.15
Zm00001d013766_P001 Maize plastid 38.87 71.53
Solyc12g011450.1.1 Tomato plastid 69.43 69.43
Solyc07g063600.2.1 Tomato nucleus 68.3 69.08
AT2G05100.2 Thale cress plastid 81.13 67.82
Solyc08g067330.1.1 Tomato plastid 24.91 67.35
HORVU5Hr1G082420.1 Barley plastid 83.4 64.43
Solyc06g063370.2.1 Tomato plastid 42.26 39.16
Solyc05g056070.2.1 Tomato plastid 33.21 35.77
Solyc05g056050.2.1 Tomato plastid 33.21 35.77
Solyc10g007690.2.1 Tomato plastid 34.34 33.33
Solyc12g009200.1.1 Tomato nucleus, plastid 32.45 33.08
Solyc12g011280.1.1 Tomato plastid 33.21 32.23
Solyc10g006230.2.1 Tomato plastid 32.83 32.22
Solyc09g014520.2.1 Tomato plastid 33.96 31.58
Solyc06g069730.2.1 Tomato plastid 29.06 30.8
Solyc03g115900.2.1 Tomato plastid 28.3 29.88
Solyc07g022900.2.1 Tomato plastid 26.79 27.1
Solyc04g082920.2.1 Tomato plastid 22.26 27.06
Solyc01g105050.2.1 Tomato plastid 25.66 26.56
Solyc01g105030.2.1 Tomato plastid 25.66 26.56
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0003674
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009416GO:GO:0009507GO:GO:0009522
GO:GO:0009523GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009628GO:GO:0009765
GO:GO:0009768GO:GO:0009941GO:GO:0009987GO:GO:0010287GO:GO:0015979GO:GO:0016020
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0019538GO:GO:0031409GO:GO:0046872
InterPro:IPR023329UniProt:K4DBF1PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF33SUPFAM:SSF103511
EnsemblPlantsGene:Solyc12g006140.1EnsemblPlants:Solyc12g006140.1.1UniParc:UPI000276A635:::
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4DBF1]
Coordinates
chr12:-:693217..694582
Molecular Weight (calculated)
28700.1 Da
IEP (calculated)
5.115
GRAVY (calculated)
-0.078
Length
265 amino acids
Sequence
(BLAST)
001: MATSAIQHSA FAGQTALKSQ NEFIRKIGSF EGGRVTMRRT VKSAPQSIWY GEDRPKYLGP FSEQTPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPEILSK NGVTFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WASQVVLMGF VEGYRVGGGP LGEGLDKIYP GGAFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPIE NLSDHIADPV ANNAWAYATN FVPGK
Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)
001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK
Arabidopsis Description
LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.