Factsheet for Bra039070.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20039	Canola	plastid	100.0	100.0
Bra025297.1-P	Field mustard	plastid	100.0	99.62
Bra013183.1-P	Field mustard	plastid	96.98	96.98
Bra033022.1-P	Field mustard	plastid	93.58	96.12
VIT_12s0057g00630.t01	Wine grape	plastid	88.68	88.68
Solyc12g006140.1.1	Tomato	plastid	88.68	88.68
KRH74003	Soybean	nucleus, plastid	88.3	88.3
PGSC0003DMT400010985	Potato	plastid	87.92	87.92
KRH14122	Soybean	nucleus, plastid	87.17	87.17
GSMUA_Achr4P33040_001	Banana	plastid, unclear	86.42	86.74
AT3G27690.2	Thale cress	golgi, plastid	97.36	86.58
PGSC0003DMT400015740	Potato	plastid	85.66	85.66
Os03t0592500-01	Rice	extracellular	84.91	85.55
Solyc07g047850.2.1	Tomato	plastid	85.28	85.28
Zm00001d033136_P001	Maize	plastid	83.02	84.62
Zm00001d033132_P001	Maize	plastid	83.02	84.62
TraesCS5B01G322900.1	Wheat	plastid	83.4	84.03
TraesCS5D01G329200.1	Wheat	plastid	83.4	84.03
TraesCS5A01G322500.1	Wheat	plastid	83.4	84.03
EER93861	Sorghum	plastid	83.02	83.97
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	50.94	83.85
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	50.94	83.85
Bra022976.1-P	Field mustard	plastid	75.09	74.81
Bra030182.1-P	Field mustard	plastid	75.09	74.53
Bra010807.1-P	Field mustard	plastid	74.72	74.16
Bra005425.1-P	Field mustard	plastid	74.34	74.06
Bra030181.1-P	Field mustard	plastid	74.34	73.78
Zm00001d013766_P001	Maize	plastid	38.49	70.83
Bra002999.1-P	Field mustard	plastid	68.3	68.3
HORVU5Hr1G082420.1	Barley	plastid	83.02	64.14
Bra000708.1-P	Field mustard	plastid	42.26	40.0
Bra037913.1-P	Field mustard	plastid	41.51	39.15
Bra003198.1-P	Field mustard	plastid	31.7	34.85
Bra007109.1-P	Field mustard	plastid	31.7	34.85
Bra008265.1-P	Field mustard	plastid	41.13	33.64
Bra014433.1-P	Field mustard	plastid	31.32	32.42
Bra018144.1-P	Field mustard	plastid	30.19	31.75
Bra003451.1-P	Field mustard	plastid	30.94	31.66
Bra027083.1-P	Field mustard	plastid	32.08	31.37
Bra031427.1-P	Field mustard	plastid	31.7	30.77
Bra016522.1-P	Field mustard	plastid	30.57	30.45
Bra029732.1-P	Field mustard	plastid	32.45	29.86
Bra028906.1-P	Field mustard	plastid	32.45	29.86
Bra014048.1-P	Field mustard	mitochondrion, plastid	27.92	28.68
Bra038584.1-P	Field mustard	plastid	30.94	28.57
Bra004989.1-P	Field mustard	plastid	29.06	27.9
Bra016650.1-P	Field mustard	plastid	26.42	27.24
Bra026745.1-P	Field mustard	plastid	26.42	27.03
Bra026099.1-P	Field mustard	plastid	26.04	26.74

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra039070	EnsemblPlants:Bra039070.1	EnsemblPlants:Bra039070.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4FDA0	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF33	SUPFAM:SSF103511	UniParc:UPI0002541B9A	SEG:seg	:	:

Description

AT3G27690 (E=1e-139) LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3; chlorophyll binding

Coordinates

chrA09:+:1268058..1269113

Molecular Weight (calculated)

28611.1 Da

IEP (calculated)

5.699

GRAVY (calculated)

-0.124

Length

265 amino acids

Sequence
(BLAST)

001: MATSAIQHSS FAGQTALKPS NDLLRKVGAS NGGRVVMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WASQVVLMGL IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHVADPV ANNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)

001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK

Arabidopsis Description

LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.