Factsheet for Bra000708.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90755	Canola	plastid	98.93	98.93
CDY05098	Canola	plastid	97.86	97.86
AT4G10340.1	Thale cress	plastid	95.71	95.71
Bra037913.1-P	Field mustard	plastid	94.64	94.31
GSMUA_Achr6P12670_001	Banana	plasma membrane	81.43	81.72
PGSC0003DMT400068129	Potato	plastid	82.14	80.7
Solyc06g063370.2.1	Tomato	plastid	82.14	80.42
GSMUA_Achr3P02780_001	Banana	plastid	81.43	78.62
Os11t0242800-01	Rice	plastid	79.29	78.45
TraesCS4D01G086400.1	Wheat	plastid	80.0	78.32
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	80.0	78.32
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	80.0	77.78
Zm00001d048998_P001	Maize	plastid	77.86	77.03
EES09551	Sorghum	plastid	77.5	76.95
Zm00001d007267_P002	Maize	plastid	77.5	76.68
GSMUA_Achr10P...	Banana	plastid	77.14	75.0
HORVU4Hr1G015260.2	Barley	plastid	70.71	68.75
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	85.71	59.7
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	27.14	47.2
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	27.14	47.2
Bra033022.1-P	Field mustard	plastid	40.0	43.41
Bra013183.1-P	Field mustard	plastid	40.71	43.02
KRH58809	Soybean	mitochondrion	48.21	42.59
Bra022976.1-P	Field mustard	plastid	40.36	42.48
Bra039070.1-P	Field mustard	plastid	40.0	42.26
Bra025297.1-P	Field mustard	plastid	40.0	42.11
Bra005425.1-P	Field mustard	plastid	40.0	42.11
Bra030181.1-P	Field mustard	plastid	40.0	41.95
Bra030182.1-P	Field mustard	plastid	40.0	41.95
Bra010807.1-P	Field mustard	plastid	40.0	41.95
Bra002999.1-P	Field mustard	plastid	37.86	40.0
Bra003198.1-P	Field mustard	plastid	29.29	34.02
Bra007109.1-P	Field mustard	plastid	29.29	34.02
Bra027083.1-P	Field mustard	plastid	32.86	33.95
Bra018144.1-P	Field mustard	plastid	30.36	33.73
Bra014433.1-P	Field mustard	plastid	30.71	33.59
Bra003451.1-P	Field mustard	plastid	31.07	33.59
Bra031427.1-P	Field mustard	plastid	32.5	33.33
Bra014048.1-P	Field mustard	mitochondrion, plastid	30.71	33.33
Bra008265.1-P	Field mustard	plastid	37.86	32.72
Bra029732.1-P	Field mustard	plastid	31.07	30.21
Bra016522.1-P	Field mustard	plastid	28.57	30.08
Bra038584.1-P	Field mustard	plastid	30.71	29.97
Bra028906.1-P	Field mustard	plastid	30.71	29.86
Bra004989.1-P	Field mustard	plastid	28.93	29.35
Bra016650.1-P	Field mustard	plastid	24.64	26.85
Bra026745.1-P	Field mustard	plastid	24.64	26.64
Bra026099.1-P	Field mustard	plastid	23.93	25.97

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra000708	EnsemblPlants:Bra000708.1	EnsemblPlants:Bra000708.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009517	GO:GO:0009522	GO:GO:0009523	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009765
GO:GO:0009783	GO:GO:0009987	GO:GO:0010114	GO:GO:0010196	GO:GO:0010207	GO:GO:0010218
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0019904	GO:GO:0042651	InterPro:IPR023329	UniProt:M4C930
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	UniParc:UPI0002540356	SEG:seg

Description

AT4G10340 (E=1e-133) LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding

Coordinates

chrA03:+:12573385..12574658

Molecular Weight (calculated)

30053.2 Da

IEP (calculated)

6.805

GRAVY (calculated)

-0.023

Length

280 amino acids

Sequence
(BLAST)

001: MASIGVSEML GTPLNLKAVS RSSAPSASSP GTFKTVALFS KKKPAPAKAK TVSVANDELS KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLSKHLSD PFGNNLLTVI AGTAERAPTL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.