Factsheet for Bra014433.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89120	Canola	plastid	100.0	100.0
CDY43936	Canola	plastid	98.83	98.83
PGSC0003DMT400037285	Potato	extracellular, vacuole	58.59	96.15
AT3G61470.1	Thale cress	plastid	95.31	94.94
Bra003451.1-P	Field mustard	plastid	94.14	93.05
Solyc10g006230.2.1	Tomato	plastid	86.33	81.85
VIT_01s0010g03620.t01	Wine grape	plastid	85.94	81.18
TraesCS2B01G220100.1	Wheat	golgi, plastid	80.47	80.78
TraesCS2D01G200700.1	Wheat	plastid	80.47	80.78
TraesCS2A01G187200.1	Wheat	plastid	80.47	80.16
KRH06319	Soybean	nucleus, plastid	84.38	80.0
Zm00001d006663_P001	Maize	plastid	80.86	79.62
KXG36552	Sorghum	plastid	81.25	79.09
Os07t0577600-01	Rice	plastid	80.86	78.71
GSMUA_Achr6P20660_001	Banana	mitochondrion	61.72	77.07
Zm00001d021906_P001	Maize	plastid	80.47	76.3
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	71.48	73.49
KRH47742	Soybean	nucleus	80.47	73.05
HORVU2Hr1G036960.4	Barley	plastid	78.91	71.63
KRH68993	Soybean	plastid	80.86	67.21
AT5G28450.1	Thale cress	plastid	44.53	65.9
Bra016522.1-P	Field mustard	plastid	55.86	53.76
Bra018144.1-P	Field mustard	plastid	48.44	49.21
Bra014048.1-P	Field mustard	mitochondrion, plastid	40.23	39.92
Bra003198.1-P	Field mustard	plastid	36.72	39.0
Bra007109.1-P	Field mustard	plastid	36.72	39.0
Bra027083.1-P	Field mustard	plastid	40.62	38.38
Bra031427.1-P	Field mustard	plastid	40.62	38.1
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	23.83	37.89
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	23.83	37.89
Bra030181.1-P	Field mustard	plastid	36.72	35.21
Bra010807.1-P	Field mustard	plastid	36.72	35.21
Bra038584.1-P	Field mustard	plastid	39.45	35.19
Bra022976.1-P	Field mustard	plastid	36.33	34.96
Bra005425.1-P	Field mustard	plastid	35.94	34.59
Bra030182.1-P	Field mustard	plastid	35.94	34.46
Bra026745.1-P	Field mustard	plastid	34.38	33.98
Bra026099.1-P	Field mustard	plastid	33.98	33.72
Bra016650.1-P	Field mustard	plastid	33.2	33.07
Bra002999.1-P	Field mustard	plastid	32.81	31.7
Bra033022.1-P	Field mustard	plastid	31.64	31.4
Bra039070.1-P	Field mustard	plastid	32.42	31.32
Bra013183.1-P	Field mustard	plastid	32.42	31.32
Bra025297.1-P	Field mustard	plastid	32.42	31.2
Bra000708.1-P	Field mustard	plastid	33.59	30.71
Bra004989.1-P	Field mustard	plastid	32.81	30.43
Bra029732.1-P	Field mustard	plastid	33.59	29.86
Bra037913.1-P	Field mustard	plastid	32.42	29.54
Bra028906.1-P	Field mustard	plastid	33.2	29.51
Bra008265.1-P	Field mustard	plastid	32.03	25.31

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra014433	EnsemblPlants:Bra014433.1	EnsemblPlants:Bra014433.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009644
GO:GO:0009645	GO:GO:0009765	GO:GO:0009768	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019904	InterPro:IPR023329
UniProt:M4DD65	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	UniParc:UPI0002543843
SEG:seg	:	:	:	:	:

Description

AT3G61470 (E=4e-132) LHCA2 | LHCA2; chlorophyll binding

Coordinates

chrA04:-:610446..611668

Molecular Weight (calculated)

27607.2 Da

IEP (calculated)

7.505

GRAVY (calculated)

0.058

Length

256 amino acids

Sequence
(BLAST)

001: MASLCASSAI AAISSPSFLC GKKLRLNKKL SVAAVSKSAA SVRAVAADPE RPIWFPGSTP PEWLDGSLPG DFGFDPLGLS SDPDSLKWNV QAEIVHCRWA
101: MLGAAGIFIP EFLTKIGILN TPSWYTAGEQ EYFTDKTTLF VVELILIGWA EGRRWADIIK PGSVNTDPIF PNNKLTGTDV GYPGGLWFDP LGWGSGSPAK
201: IKELRTKEIK NGRLAMLAVM GAWFQHIYTG TGPIDNLFAH LADPGHATIF AAFTPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.