Factsheet for Bra014048.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43213	Canola	mitochondrion, plastid	98.45	98.45
CDY17055	Canola	mitochondrion, plastid	98.06	98.06
AT1G45474.2	Thale cress	mitochondrion	85.27	85.94
Solyc07g022900.2.1	Tomato	plastid	70.16	69.08
VIT_18s0001g10550.t01	Wine grape	plastid	70.16	68.56
TraesCS6D01G299200.1	Wheat	plastid	63.18	64.17
KRH51989	Soybean	nucleus	70.54	63.86
Os02t0764500-01	Rice	plastid	64.34	63.6
TraesCS6B01G350500.1	Wheat	plastid	63.18	63.42
TraesCS6A01G319700.1	Wheat	plastid	62.4	63.39
GSMUA_Achr7P13020_001	Banana	plastid	66.28	62.87
Zm00001d018157_P001	Maize	plastid	64.34	61.71
EES07574	Sorghum	plastid	63.57	61.65
PGSC0003DMT400011381	Potato	plastid	58.14	56.39
TraesCS6B01G312900.1	Wheat	plastid	30.23	53.79
KRH61286	Soybean	mitochondrion	41.86	49.32
Bra018144.1-P	Field mustard	plastid	41.47	42.46
Bra014433.1-P	Field mustard	plastid	39.92	40.23
Bra003451.1-P	Field mustard	plastid	39.53	39.38
Bra016522.1-P	Field mustard	plastid	36.05	34.96
Bra031427.1-P	Field mustard	plastid	36.82	34.8
Bra027083.1-P	Field mustard	plastid	36.43	34.69
Bra007109.1-P	Field mustard	plastid	32.17	34.44
Bra003198.1-P	Field mustard	plastid	32.17	34.44
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	21.32	34.16
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	21.32	34.16
Bra026099.1-P	Field mustard	plastid	33.33	33.33
Bra026745.1-P	Field mustard	plastid	33.33	33.2
Bra016650.1-P	Field mustard	plastid	32.56	32.68
Bra038584.1-P	Field mustard	plastid	35.66	32.06
Bra000708.1-P	Field mustard	plastid	33.33	30.71
Bra029732.1-P	Field mustard	plastid	33.33	29.86
Bra037913.1-P	Field mustard	plastid	32.17	29.54
Bra022976.1-P	Field mustard	plastid	29.84	28.95
Bra030181.1-P	Field mustard	plastid	29.84	28.84
Bra010807.1-P	Field mustard	plastid	29.84	28.84
Bra028906.1-P	Field mustard	plastid	32.17	28.82
Bra002999.1-P	Field mustard	plastid	29.46	28.68
Bra005425.1-P	Field mustard	plastid	29.46	28.57
Bra030182.1-P	Field mustard	plastid	29.46	28.46
Bra013183.1-P	Field mustard	plastid	29.07	28.3
Bra033022.1-P	Field mustard	plastid	28.29	28.29
Bra039070.1-P	Field mustard	plastid	28.68	27.92
Bra025297.1-P	Field mustard	plastid	28.68	27.82
Bra004989.1-P	Field mustard	plastid	28.68	26.81
Bra008265.1-P	Field mustard	plastid	32.56	25.93

Protein Annotations

MapMan:1.1.4.1.5	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra014048	EnsemblPlants:Bra014048.1	EnsemblPlants:Bra014048.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009644	GO:GO:0009645
GO:GO:0009765	GO:GO:0009768	GO:GO:0009782	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0042803
InterPro:IPR023329	UniProt:M4DC36	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23	SUPFAM:SSF103511
UniParc:UPI0002546AFF	SEG:seg	:	:	:	:

Description

AT1G45474 (E=2e-115) LHCA5 | LHCA5; pigment binding

Coordinates

chrA08:-:4121402..4122589

Molecular Weight (calculated)

27911.8 Da

IEP (calculated)

8.800

GRAVY (calculated)

0.078

Length

258 amino acids

Sequence
(BLAST)

001: MSVFLRGGIA GGFHLRSRDS SAVITKRRIS SVGAVTGRSV NPAAAIEQRA TWLPGLEPPP YLDGKLAGDY GFDPLGLGED PKSLKWYVQA ELVHARFAML
101: GVAGILLTDL LRTTGISNLP VWYEAGATKF DFASTKTLIV VQFLLMGFAE TKRYMDFVSP GSQAAEGTFF GLEAALEGLE PGYPGGPFLN PLGLAKDIKN
201: AHDWKLKEIK NGRLAMMAML GFFVQASVTH TGPIDNLVEH LSNPWHKTII QTLFTSAS

Best Arabidopsis Sequence Match ( AT1G45474.2 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.