Factsheet for Bra003451.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51572	Canola	plastid	99.23	99.23
Bra014433.1-P	Field mustard	plastid	93.05	94.14
PGSC0003DMT400037285	Potato	extracellular, vacuole	56.37	93.59
AT3G61470.1	Thale cress	plastid	92.28	93.0
Solyc10g006230.2.1	Tomato	plastid	85.33	81.85
KRH06319	Soybean	nucleus, plastid	82.63	79.26
VIT_01s0010g03620.t01	Wine grape	plastid	82.63	78.97
TraesCS2D01G200700.1	Wheat	plastid	77.61	78.82
TraesCS2B01G220100.1	Wheat	golgi, plastid	77.61	78.82
TraesCS2A01G187200.1	Wheat	plastid	77.61	78.21
Zm00001d006663_P001	Maize	plastid	78.38	78.08
KXG36552	Sorghum	plastid	79.15	77.95
Os07t0577600-01	Rice	plastid	78.38	77.19
Zm00001d021906_P001	Maize	plastid	77.99	74.81
GSMUA_Achr6P20660_001	Banana	mitochondrion	58.3	73.66
KRH47742	Soybean	nucleus	78.76	72.34
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	68.34	71.08
HORVU2Hr1G036960.4	Barley	plastid	76.06	69.86
KRH68993	Soybean	plastid	81.47	68.51
AT5G28450.1	Thale cress	plastid	41.7	62.43
Bra016522.1-P	Field mustard	plastid	55.21	53.76
Bra018144.1-P	Field mustard	plastid	47.1	48.41
Bra003198.1-P	Field mustard	plastid	37.07	39.83
Bra007109.1-P	Field mustard	plastid	37.07	39.83
Bra014048.1-P	Field mustard	mitochondrion, plastid	39.38	39.53
Bra027083.1-P	Field mustard	plastid	40.15	38.38
Bra031427.1-P	Field mustard	plastid	40.15	38.1
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	23.17	37.27
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	23.17	37.27
Bra026099.1-P	Field mustard	plastid	34.75	34.88
Bra038584.1-P	Field mustard	plastid	38.61	34.84
Bra030181.1-P	Field mustard	plastid	35.52	34.46
Bra010807.1-P	Field mustard	plastid	35.52	34.46
Bra026745.1-P	Field mustard	plastid	34.36	34.36
Bra022976.1-P	Field mustard	plastid	35.14	34.21
Bra005425.1-P	Field mustard	plastid	34.75	33.83
Bra030182.1-P	Field mustard	plastid	34.75	33.71
Bra016650.1-P	Field mustard	plastid	33.2	33.46
Bra002999.1-P	Field mustard	plastid	32.05	31.32
Bra004989.1-P	Field mustard	plastid	33.2	31.16
Bra000708.1-P	Field mustard	plastid	33.59	31.07
Bra033022.1-P	Field mustard	plastid	30.89	31.01
Bra039070.1-P	Field mustard	plastid	31.66	30.94
Bra013183.1-P	Field mustard	plastid	31.66	30.94
Bra025297.1-P	Field mustard	plastid	31.66	30.83
Bra029732.1-P	Field mustard	plastid	33.59	30.21
Bra037913.1-P	Field mustard	plastid	32.43	29.89
Bra028906.1-P	Field mustard	plastid	33.2	29.86
Bra008265.1-P	Field mustard	plastid	31.66	25.31

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra003451	EnsemblPlants:Bra003451.1	EnsemblPlants:Bra003451.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4CGW8	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	UniParc:UPI0002541863	SEG:seg	:	:

Description

AT3G61470 (E=2e-129) LHCA2 | LHCA2; chlorophyll binding

Coordinates

chrA07:+:13263797..13264879

Molecular Weight (calculated)

27908.5 Da

IEP (calculated)

6.946

GRAVY (calculated)

0.050

Length

259 amino acids

Sequence
(BLAST)

001: MASLCASSAI AAISSPGFLG GKKLRLNKKL NVPAVSRSGT SVRAVAADPD RPIWFPGSTP PEWLDGSLPG DFGFDPLGLS SDPDSLKWNA QAELVHCRWA
101: MLGAAGIFIP EFLTKIGILN TPSWYTAGEQ EYFTDKTTLF VVELILIGWA EGRRWADIIK PGSVNTDPIF PNNKLTGTDV GYPGGLWFDP LGWGSGSPAK
201: IKELRTKEIK NGRLAMLAVM GAWFQHIYTG TGPIDNLFAH LADPGHATIF AVSVIQINL

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.