Factsheet for Bra030182.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra003782.1-P
Bra004709.1-P
Bra005827.1-P
Bra011734.1-P
Bra015885.1-P
Bra018126.1-P
Bra032697.1-P
Bra034882.1-P
Bra037607.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29910.1	Bra003782.1-P	AT1G74890.1	18642946
AT1G29910.1	Bra015885.1-P	AT1G74890.1	18642946
AT1G29910.1	Bra018126.1-P	AT3G47620.1	21798944
AT1G29920.1	Bra003782.1-P	AT1G74890.1	18642946
AT1G29920.1	Bra015885.1-P	AT1G74890.1	18642946
AT1G29920.1	Bra037607.1-P	AT3G44880.1	22366162
AT1G29920.1	Bra032697.1-P	AT4G13250.1	22366162
AT1G29920.1	Bra034882.1-P	AT4G13250.1	22366162
AT1G29920.1	Bra011734.1-P	AT4G37000.1	22366162
AT1G29920.1	Bra005827.1-P	AT5G04900.1	22366162
AT1G29930.1	Bra000267.1-P	AT2G42580.1	19000166
AT1G29930.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43198	Canola	plastid	100.0	100.0
CDX98158	Canola	plastid	98.5	98.5
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	59.18	98.14
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	58.8	97.52
AT1G29930.1	Thale cress	plastid	97.38	97.38
AT1G29920.1	Thale cress	plastid	97.0	97.0
AT1G29910.1	Thale cress	plastid	97.0	97.0
AT2G34420.1	Thale cress	plastid	96.25	96.98
Bra030181.1-P	Field mustard	plastid	96.63	96.63
Bra010807.1-P	Field mustard	plastid	96.63	96.63
Bra022976.1-P	Field mustard	plastid	95.51	95.86
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	47.19	94.74
Bra005425.1-P	Field mustard	plastid	94.38	94.74
AT2G34430.1	Thale cress	plastid	94.38	94.74
Bra013183.1-P	Field mustard	plastid	75.28	75.85
Bra039070.1-P	Field mustard	plastid	74.53	75.09
Bra025297.1-P	Field mustard	plastid	74.53	74.81
Bra033022.1-P	Field mustard	plastid	71.54	74.03
Bra002999.1-P	Field mustard	plastid	67.79	68.3
Bra037913.1-P	Field mustard	plastid	42.7	40.57
Bra000708.1-P	Field mustard	plastid	41.95	40.0
Bra007109.1-P	Field mustard	plastid	35.96	39.83
Bra003198.1-P	Field mustard	plastid	35.96	39.83
Bra014433.1-P	Field mustard	plastid	34.46	35.94
Bra003451.1-P	Field mustard	plastid	33.71	34.75
Bra008265.1-P	Field mustard	plastid	41.57	34.26
Bra029732.1-P	Field mustard	plastid	36.7	34.03
Bra028906.1-P	Field mustard	plastid	36.33	33.68
Bra018144.1-P	Field mustard	plastid	31.46	33.33
Bra027083.1-P	Field mustard	plastid	33.33	32.84
Bra016522.1-P	Field mustard	plastid	32.21	32.33
Bra031427.1-P	Field mustard	plastid	32.96	32.23
Bra004989.1-P	Field mustard	plastid	32.58	31.52
Bra026745.1-P	Field mustard	plastid	30.34	31.27
Bra026099.1-P	Field mustard	plastid	29.21	30.23
Bra016650.1-P	Field mustard	plastid	28.84	29.96
Bra014048.1-P	Field mustard	mitochondrion, plastid	28.46	29.46
Bra038584.1-P	Field mustard	plastid	31.46	29.27

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra030182	EnsemblPlants:Bra030182.1	EnsemblPlants:Bra030182.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4EN12	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF56	SUPFAM:SSF103511	UniParc:UPI0002540FB2	SEG:seg	:	:

Description

AT1G29930 (E=3e-145) CAB1, AB140, CAB140, LHCB1.3 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding

Coordinates

chrA07:-:5890799..5891602

Molecular Weight (calculated)

28242.7 Da

IEP (calculated)

5.354

GRAVY (calculated)

0.042

Length

267 amino acids

Sequence
(BLAST)

001: MAASTMALSS SAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGAERVKYLG PFSGEPPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHCRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKEVKNGR LAMFSMFGFF VQAIVTGKGP LENLADHLAD PVNNNAWAFA TNFVPGK

Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.