Factsheet for Bra037913.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000708.1-P	Field mustard	plastid	94.31	94.64
PGSC0003DMT400068129	Potato	plastid	82.21	81.05
Solyc06g063370.2.1	Tomato	plastid	81.49	80.07
GSMUA_Achr6P12670_001	Banana	plasma membrane	79.36	79.93
Zm00001d007267_P002	Maize	plastid	79.72	79.15
Zm00001d048998_P001	Maize	plastid	79.36	78.8
Os11t0242800-01	Rice	plastid	79.0	78.45
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	79.72	78.32
TraesCS4D01G086400.1	Wheat	plastid	79.72	78.32
EES09551	Sorghum	plastid	78.29	78.01
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	79.72	77.78
GSMUA_Achr3P02780_001	Banana	plastid	79.72	77.24
GSMUA_Achr10P...	Banana	plastid	75.8	73.96
HORVU4Hr1G015260.2	Barley	plastid	70.46	68.75
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	84.34	58.96
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	27.76	48.45
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	27.76	48.45
Bra022976.1-P	Field mustard	plastid	40.93	43.23
Bra005425.1-P	Field mustard	plastid	40.57	42.86
Bra010807.1-P	Field mustard	plastid	40.57	42.7
Bra030181.1-P	Field mustard	plastid	40.57	42.7
Bra030182.1-P	Field mustard	plastid	40.57	42.7
Bra033022.1-P	Field mustard	plastid	39.15	42.64
Bra013183.1-P	Field mustard	plastid	39.86	42.26
Bra039070.1-P	Field mustard	plastid	39.15	41.51
Bra025297.1-P	Field mustard	plastid	39.15	41.35
KRH58809	Soybean	mitochondrion	46.62	41.32
Bra002999.1-P	Field mustard	plastid	38.79	41.13
Bra018144.1-P	Field mustard	plastid	29.54	32.94
Bra027083.1-P	Field mustard	plastid	31.67	32.84
Bra003198.1-P	Field mustard	plastid	28.11	32.78
Bra007109.1-P	Field mustard	plastid	28.11	32.78
Bra003451.1-P	Field mustard	plastid	29.89	32.43
Bra014433.1-P	Field mustard	plastid	29.54	32.42
Bra031427.1-P	Field mustard	plastid	31.32	32.23
Bra014048.1-P	Field mustard	mitochondrion, plastid	29.54	32.17
Bra008265.1-P	Field mustard	plastid	36.65	31.79
Bra029732.1-P	Field mustard	plastid	30.25	29.51
Bra016522.1-P	Field mustard	plastid	27.76	29.32
Bra028906.1-P	Field mustard	plastid	29.89	29.17
Bra004989.1-P	Field mustard	plastid	28.47	28.99
Bra038584.1-P	Field mustard	plastid	29.54	28.92
Bra016650.1-P	Field mustard	plastid	23.84	26.07
Bra026745.1-P	Field mustard	plastid	23.84	25.87
Bra026099.1-P	Field mustard	plastid	23.13	25.19

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra037913	EnsemblPlants:Bra037913.1	EnsemblPlants:Bra037913.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4F9Z9	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	UniParc:UPI0002542420	SEG:seg	:	:

Description

AT4G10340 (E=2e-136) LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding

Coordinates

chrA09:+:11629370..11630701

Molecular Weight (calculated)

30263.6 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.005

Length

281 amino acids

Sequence
(BLAST)

001: MASLGVSEML GTPLNFRAVS RPSAPLASIP ATFKTVALFS KKKPAPPPKA KTVSAANDEL AKWYGPDRRI FLPDGLLDRS EIPEYLNGEV AGDYGYDPFG
101: LGKKPENFAK YQAFELIHAR WAMLGAAGCI IPEALNKYGA NCGPEAVWFK TGALLLDGNT LSYFGKNIPI NLVLAVVAEV VLLGGAEYYR ITNGLDFEDK
201: LHPGGPFDPL GLAKDPEQGA LLKVKEIKNG RLAMFSMFAF FIQAYVTGEG PVENLSKHLS DPFGNNLLTV IAGTAERAPT L

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.