Factsheet for Solyc06g063370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068129	Potato	plastid	98.6	98.95
AT4G10340.1	Thale cress	plastid	81.12	82.86
CDX90755	Canola	plastid	81.12	82.86
CDY05098	Canola	plastid	81.12	82.86
CDY60092	Canola	plastid	81.12	82.56
GSMUA_Achr6P12670_001	Banana	plasma membrane	80.42	82.44
GSMUA_Achr3P02780_001	Banana	plastid	83.57	82.41
Bra000708.1-P	Field mustard	plastid	80.42	82.14
Bra037913.1-P	Field mustard	plastid	80.07	81.49
CDX86864	Canola	plastid	58.39	79.9
GSMUA_Achr10P...	Banana	plastid	80.07	79.51
Os11t0242800-01	Rice	plastid	78.67	79.51
EES09551	Sorghum	plastid	76.57	77.66
TraesCS4D01G086400.1	Wheat	plastid	77.62	77.62
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	77.62	77.62
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	77.62	77.08
Zm00001d007267_P002	Maize	plastid	76.22	77.03
Zm00001d048998_P001	Maize	plastid	76.22	77.03
HORVU4Hr1G015260.2	Barley	plastid	68.88	68.4
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	89.86	63.93
Solyc08g067320.1.1	Tomato	plastid	18.53	58.24
Solyc02g071000.1.1	Tomato	nucleus, plastid	44.76	48.3
Solyc08g067330.1.1	Tomato	plastid	16.43	47.96
Solyc03g005770.1.1	Tomato	nucleus	44.41	47.57
Solyc03g005780.1.1	Tomato	plastid	44.41	47.57
Solyc02g070980.1.1	Tomato	nucleus, plastid	44.06	47.55
Solyc03g005760.1.1	Tomato	nucleus	44.06	47.19
Solyc02g070970.1.1	Tomato	plastid	43.71	47.17
Solyc02g070940.1.1	Tomato	plastid	43.71	47.17
Solyc02g070950.1.1	Tomato	plastid	43.71	47.17
Solyc02g071010.1.1	Tomato	plastid	43.71	47.17
Solyc02g071030.1.1	Tomato	plastid	43.71	47.17
Solyc02g070990.1.1	Tomato	plastid	43.36	46.79
KRH58809	Soybean	mitochondrion	49.3	44.48
Solyc07g063600.2.1	Tomato	nucleus	40.56	44.27
Solyc12g011450.1.1	Tomato	plastid	40.91	44.15
Solyc07g047850.2.1	Tomato	plastid	39.51	42.64
Solyc12g006140.1.1	Tomato	plastid	39.16	42.26
Solyc10g007690.2.1	Tomato	plastid	33.57	35.16
Solyc05g056050.2.1	Tomato	plastid	29.72	34.55
Solyc05g056070.2.1	Tomato	plastid	29.37	34.15
Solyc12g011280.1.1	Tomato	plastid	32.52	34.07
Solyc12g009200.1.1	Tomato	nucleus, plastid	30.77	33.85
Solyc10g006230.2.1	Tomato	plastid	31.47	33.33
Solyc06g069730.2.1	Tomato	plastid	28.67	32.8
Solyc03g115900.2.1	Tomato	plastid	28.32	32.27
Solyc09g014520.2.1	Tomato	plastid	30.07	30.18
Solyc07g022900.2.1	Tomato	plastid	27.27	29.77
Solyc04g082920.2.1	Tomato	plastid	20.28	26.61
Solyc01g105030.2.1	Tomato	plastid	23.78	26.56
Solyc01g105050.2.1	Tomato	plastid	22.73	25.39

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:K4C768	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc06g063370.2
EnsemblPlants:Solyc06g063370.2.1	UniParc:UPI0000178173	SEG:seg	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4C768]

Coordinates

chr6:-:40047391..40049551

Molecular Weight (calculated)

30524.8 Da

IEP (calculated)

5.795

GRAVY (calculated)

0.070

Length

286 amino acids

Sequence
(BLAST)

001: MAAATSLYVS EMLGSPVKFS GVARPAAPSP SSSATFKTVA LFKKKAAAAP AKAKAAAVSP ADDELAKWYG PDRRIFLPEG LLDRSEIPEY LNGEVPGDYG
101: YDPFGLSKKP EDFAKYQAYE LIHARWAMLG AAGFIIPEAF NKFGANCGPE AVWFKTGALL LDGNTLNYFG KNIPINLILA VVAEVVLVGG AEYYRIINGL
201: DLEDKLHPGG PFDPLGLAKD PDQAAILKVK EIKNGRLAMF SMLGFFIQAY VTGQGPVENL AAHLSDPFGN NLLTVIGGAS ERVPTL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.