Factsheet for Solyc02g071000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021422	Potato	plastid	96.98	96.98
Solyc02g070940.1.1	Tomato	plastid	96.23	96.23
Solyc02g070950.1.1	Tomato	plastid	96.23	96.23
Solyc02g070970.1.1	Tomato	plastid	96.23	96.23
Solyc02g071010.1.1	Tomato	plastid	96.23	96.23
Solyc02g071030.1.1	Tomato	plastid	96.23	96.23
Solyc02g070980.1.1	Tomato	nucleus, plastid	95.47	95.47
Solyc02g070990.1.1	Tomato	plastid	95.47	95.47
Solyc08g067320.1.1	Tomato	plastid	32.45	94.51
Solyc03g005770.1.1	Tomato	nucleus	93.96	93.26
Solyc03g005760.1.1	Tomato	nucleus	93.58	92.88
Solyc03g005780.1.1	Tomato	plastid	93.21	92.51
Solyc07g047850.2.1	Tomato	plastid	78.49	78.49
Solyc12g006140.1.1	Tomato	plastid	77.36	77.36
Solyc08g067330.1.1	Tomato	plastid	28.3	76.53
Solyc12g011450.1.1	Tomato	plastid	70.94	70.94
Solyc07g063600.2.1	Tomato	nucleus	69.81	70.61
Solyc06g063370.2.1	Tomato	plastid	48.3	44.76
Solyc05g056050.2.1	Tomato	plastid	35.47	38.21
Solyc05g056070.2.1	Tomato	plastid	35.09	37.8
Solyc12g009200.1.1	Tomato	nucleus, plastid	34.72	35.38
Solyc06g069730.2.1	Tomato	plastid	33.21	35.2
Solyc10g007690.2.1	Tomato	plastid	35.85	34.8
Solyc12g011280.1.1	Tomato	plastid	35.09	34.07
Solyc03g115900.2.1	Tomato	plastid	31.7	33.47
Solyc09g014520.2.1	Tomato	plastid	35.85	33.33
Solyc10g006230.2.1	Tomato	plastid	33.96	33.33
Solyc04g082920.2.1	Tomato	plastid	24.91	30.28
Solyc01g105030.2.1	Tomato	plastid	27.92	28.91
Solyc07g022900.2.1	Tomato	plastid	28.3	28.63
Solyc01g105050.2.1	Tomato	plastid	27.55	28.52

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0046872
InterPro:IPR023329	UniProt:K4B878	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF25	SUPFAM:SSF103511
EnsemblPlantsGene:Solyc02g071000.1	EnsemblPlants:Solyc02g071000.1.1	UniParc:UPI0002768A34	SEG:seg	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4B878]

Coordinates

chr2:+:40519780..40520577

Molecular Weight (calculated)

28158.6 Da

IEP (calculated)

4.911

GRAVY (calculated)

0.048

Length

265 amino acids

Sequence
(BLAST)

001: MAAATMALSS PSFAGQAVKL LPSASEITGN GRITMRKAVA KSAPSSSPWY GPDRVKYLGP FSGESPSYLN GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRIAGGP LGEVVDPLYP GGSFDPLGLA
201: EDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWSYATN FVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.