Factsheet for Solyc08g067330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005760.1.1	Tomato	nucleus	82.65	30.34
Solyc03g005770.1.1	Tomato	nucleus	82.65	30.34
Solyc03g005780.1.1	Tomato	plastid	82.65	30.34
Solyc02g070940.1.1	Tomato	plastid	76.53	28.3
Solyc02g070950.1.1	Tomato	plastid	76.53	28.3
Solyc02g070970.1.1	Tomato	plastid	76.53	28.3
Solyc02g070980.1.1	Tomato	nucleus, plastid	76.53	28.3
Solyc02g070990.1.1	Tomato	plastid	76.53	28.3
Solyc02g071000.1.1	Tomato	nucleus, plastid	76.53	28.3
Solyc02g071010.1.1	Tomato	plastid	76.53	28.3
Solyc02g071030.1.1	Tomato	plastid	76.53	28.3
Solyc07g047850.2.1	Tomato	plastid	68.37	25.28
Solyc12g006140.1.1	Tomato	plastid	67.35	24.91
Solyc07g063600.2.1	Tomato	nucleus	61.22	22.9
Solyc12g011450.1.1	Tomato	plastid	60.2	22.26
Solyc04g082920.2.1	Tomato	plastid	37.76	16.97
Solyc06g063370.2.1	Tomato	plastid	47.96	16.43
Solyc12g011280.1.1	Tomato	plastid	32.65	11.72
Solyc10g007690.2.1	Tomato	plastid	31.63	11.36
Solyc01g105050.2.1	Tomato	plastid	29.59	11.33
Solyc01g105030.2.1	Tomato	plastid	29.59	11.33
Solyc05g056070.2.1	Tomato	plastid	27.55	10.98
Solyc05g056050.2.1	Tomato	plastid	27.55	10.98
Solyc06g069730.2.1	Tomato	plastid	27.55	10.8
Solyc12g009200.1.1	Tomato	nucleus, plastid	28.57	10.77
Solyc03g115900.2.1	Tomato	plastid	26.53	10.36
Solyc10g006230.2.1	Tomato	plastid	27.55	10.0
Solyc09g014520.2.1	Tomato	plastid	27.55	9.47
Solyc07g022900.2.1	Tomato	plastid	23.47	8.78
CDY17250	Canola	mitochondrion, plastid	13.27	7.98
TraesCSU01G086800.1	Wheat	cytosol	0.0	0.0
Solyc08g067320.1.1	Tomato	plastid	0.0	0.0
KRH08634	Soybean	endoplasmic reticulum	0.0	0.0

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329
UniProt:K4CLV9	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc08g067330.1
EnsemblPlants:Solyc08g067330.1.1	UniParc:UPI000276C27B	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4CLV9]

Coordinates

chr8:-:56388147..56388443

Molecular Weight (calculated)

10827.8 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.241

Length

98 amino acids

Sequence
(BLAST)

1: MRKTAAAKAK PVSSGSPWYG PDRVKYLGPF SGESPSYLTG DYGWDTAGLS ADPETFAKNR ELEVIHCRWA MLGACSWLCI SRAISLKFGE AVWFSNFQ

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.