Factsheet for PGSC0003DMT400021422

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021392	Potato	plastid	96.6	98.46
PGSC0003DMT400021390	Potato	plastid	96.6	98.46
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	59.25	98.12
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	59.25	98.12
PGSC0003DMT400092927	Potato	plastid	98.11	98.11
PGSC0003DMT400021389	Potato	plastid	97.74	97.74
Solyc02g071000.1.1	Tomato	nucleus, plastid	96.98	96.98
PGSC0003DMT400021391	Potato	plastid	95.09	96.92
PGSC0003DMT400043054	Potato	plastid	96.23	95.51
TraesCSU01G086800.1	Wheat	cytosol	35.09	94.9
PGSC0003DMT400034897	Potato	plastid	93.58	94.66
PGSC0003DMT400034899	Potato	plastid	94.72	94.01
PGSC0003DMT400034898	Potato	plastid	92.83	93.89
PGSC0003DMT400034892	Potato	plastid	92.83	93.89
PGSC0003DMT400034896	Potato	plastid	93.96	93.26
PGSC0003DMT400034893	Potato	plastid	91.7	92.75
KRH08634	Soybean	endoplasmic reticulum	43.02	91.94
PGSC0003DMT400034894	Potato	plastid	67.17	91.28
PGSC0003DMT400034902	Potato	plastid	44.91	90.84
PGSC0003DMT400022698	Potato	plastid	98.49	85.57
PGSC0003DMT400015740	Potato	plastid	78.87	78.87
PGSC0003DMT400010985	Potato	plastid	77.74	77.74
PGSC0003DMT400019031	Potato	plastid	94.34	76.22
CDY17250	Canola	mitochondrion, plastid	46.79	76.07
PGSC0003DMT400049550	Potato	plastid	70.57	71.37
PGSC0003DMT400022072	Potato	plastid	70.57	70.57
PGSC0003DMT400068129	Potato	plastid	47.17	43.86
PGSC0003DMT400037285	Potato	extracellular, vacuole	23.4	39.74
PGSC0003DMT400059995	Potato	plastid	35.85	38.62
PGSC0003DMT400060313	Potato	plastid	35.09	37.8
PGSC0003DMT400025715	Potato	plastid	43.02	35.85
PGSC0003DMT400054836	Potato	plastid	36.23	35.16
PGSC0003DMT400083158	Potato	plastid	32.83	34.8
PGSC0003DMT400007514	Potato	plastid	33.96	34.62
PGSC0003DMT400020100	Potato	plastid	35.09	34.07
PGSC0003DMT400050232	Potato	plastid	31.7	33.47
PGSC0003DMT400021871	Potato	plastid	35.85	33.33
PGSC0003DMT400032791	Potato	plastid	28.3	29.3
PGSC0003DMT400032790	Potato	plastid	27.92	28.91
PGSC0003DMT400011381	Potato	plastid	23.02	22.93

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:102589865	ProteinID:AAA80594	ProteinID:AAA80594.1	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M1AF38	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400008309
PGSC:PGSC0003DMG400008309	EnsemblPlants:PGSC0003DMT400021422	PANTHER:PTHR21649	PANTHER:PTHR21649:SF25	SUPFAM:SSF103511	EMBL:U21114
UniParc:UPI000295BCD2	RefSeq:XP_006365561.1	SEG:seg	:	:	:

Description

Chlorophyll a/b binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008309]

Coordinates

chr2:-:29947171..29948098

Molecular Weight (calculated)

28125.5 Da

IEP (calculated)

4.911

GRAVY (calculated)

0.034

Length

265 amino acids

Sequence
(BLAST)

001: MAASTMALSS PSFAGQAVKL SPSASEITGN GRITMRKAVA KSASSSSPWY GPDRVKYLGP FSGESPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRIAGGP LGEVVDPLYP GGSFDPLGLA
201: EDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWSYATN FVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.