Factsheet for PGSC0003DMT400010985

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006140.1.1	Tomato	plastid	99.25	99.25
PGSC0003DMT400015740	Potato	plastid	94.72	94.72
VIT_12s0057g00630.t01	Wine grape	plastid	91.7	91.7
GSMUA_Achr4P33040_001	Banana	plastid, unclear	90.19	90.53
KRH74003	Soybean	nucleus, plastid	90.19	90.19
KRH14122	Soybean	nucleus, plastid	89.81	89.81
CDY15050	Canola	plastid	88.68	88.68
CDX93077	Canola	plastid	88.3	88.3
Bra013183.1-P	Field mustard	plastid	88.3	88.3
Bra039070.1-P	Field mustard	plastid	87.92	87.92
AT2G05070.1	Thale cress	plastid	87.92	87.92
CDY20039	Canola	plastid	87.92	87.92
Os03t0592500-01	Rice	extracellular	87.17	87.83
Bra025297.1-P	Field mustard	plastid	87.92	87.59
CDY13732	Canola	plastid	87.92	87.59
CDY49770	Canola	plastid	87.92	87.59
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	52.83	87.5
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	52.83	87.5
CDY03989	Canola	plastid	87.55	87.22
CDY00149	Canola	plastid	87.55	87.22
CDX83726	Canola	plastid	87.17	86.84
Zm00001d033136_P001	Maize	plastid	84.91	86.54
Zm00001d033132_P001	Maize	plastid	84.91	86.54
EER93861	Sorghum	plastid	85.28	86.26
Bra033022.1-P	Field mustard	plastid	82.26	84.5
TraesCS5B01G322900.1	Wheat	plastid	83.4	84.03
TraesCS5A01G322500.1	Wheat	plastid	83.4	84.03
TraesCS5D01G329200.1	Wheat	plastid	83.4	84.03
PGSC0003DMT400021390	Potato	plastid	77.74	79.23
PGSC0003DMT400021391	Potato	plastid	77.36	78.85
PGSC0003DMT400021392	Potato	plastid	77.36	78.85
PGSC0003DMT400034897	Potato	plastid	77.74	78.63
PGSC0003DMT400021389	Potato	plastid	78.49	78.49
PGSC0003DMT400092927	Potato	plastid	78.49	78.49
PGSC0003DMT400034893	Potato	plastid	77.36	78.24
AT3G27690.2	Thale cress	golgi, plastid	87.92	78.19
PGSC0003DMT400034899	Potato	plastid	78.49	77.9
PGSC0003DMT400034892	Potato	plastid	76.98	77.86
PGSC0003DMT400034898	Potato	plastid	76.98	77.86
PGSC0003DMT400021422	Potato	plastid	77.74	77.74
PGSC0003DMT400043054	Potato	plastid	77.74	77.15
PGSC0003DMT400034896	Potato	plastid	77.74	77.15
PGSC0003DMT400034894	Potato	plastid	54.34	73.85
Zm00001d013766_P001	Maize	plastid	39.25	72.22
PGSC0003DMT400049550	Potato	plastid	68.3	69.08
PGSC0003DMT400022072	Potato	plastid	69.06	69.06
PGSC0003DMT400022698	Potato	plastid	78.49	68.2
AT2G05100.2	Thale cress	plastid	81.13	67.82
PGSC0003DMT400034902	Potato	plastid	32.45	65.65
HORVU5Hr1G082420.1	Barley	plastid	83.77	64.72
PGSC0003DMT400019031	Potato	plastid	78.49	63.41
PGSC0003DMT400068129	Potato	plastid	43.02	40.0
PGSC0003DMT400037285	Potato	extracellular, vacuole	23.02	39.1
PGSC0003DMT400060313	Potato	plastid	32.83	35.37
PGSC0003DMT400059995	Potato	plastid	32.83	35.37
PGSC0003DMT400025715	Potato	plastid	41.51	34.59
PGSC0003DMT400007514	Potato	plastid	32.45	33.08
PGSC0003DMT400054836	Potato	plastid	33.96	32.97
PGSC0003DMT400020100	Potato	plastid	33.58	32.6
PGSC0003DMT400021871	Potato	plastid	34.34	31.93
PGSC0003DMT400083158	Potato	plastid	29.81	31.6
PGSC0003DMT400050232	Potato	plastid	29.06	30.68
PGSC0003DMT400032790	Potato	plastid	26.04	26.95
PGSC0003DMT400032791	Potato	plastid	26.04	26.95
PGSC0003DMT400011381	Potato	plastid	21.51	21.43

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:102606321	ProteinID:CAA84525	ProteinID:CAA84525.1	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M0ZYW1	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400004301
PGSC:PGSC0003DMG400004301	EnsemblPlants:PGSC0003DMT400010985	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511	UniParc:UPI00029500E1
RefSeq:XP_006352013.1	EMBL:Z35160	:	:	:	:

Description

Chlorophyll a,b binding protein type I [Source:PGSC_GENE;Acc:PGSC0003DMG400004301]

Coordinates

chr12:+:6238850..6240548

Molecular Weight (calculated)

28664.0 Da

IEP (calculated)

4.807

GRAVY (calculated)

-0.067

Length

265 amino acids

Sequence
(BLAST)

001: MATSAIQQSA FAGQTALKSQ NEFIRTIGSF EGGRVTMRRT VKSAPQSIWY GEDRPKYLGP FSEQTPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPEILSK NGVTFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WASQVVLMGF VEGYRVGGGP LGEGLDKIYP GGAFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPIE NLSDHIADPV ANNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G05100.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS NELLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGN

Arabidopsis Description

LHCB2.1photosystem II light harvesting complex gene 2.1 [Source:TAIR;Acc:AT2G05100]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.