Factsheet for PGSC0003DMT400021871

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g014520.2.1	Tomato	plastid	98.25	98.25
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	45.96	89.73
KRH75874	Soybean	mitochondrion, nucleus, plastid	90.88	89.31
KRH65776	Soybean	nucleus, plastid	90.53	88.97
Bra029732.1-P	Field mustard	plastid	86.32	85.42
CDY44667	Canola	plastid	86.32	85.42
CDY53084	Canola	plastid	85.96	84.78
Bra028906.1-P	Field mustard	plastid	85.26	84.38
CDY04834	Canola	plastid	84.91	84.32
AT3G08940.2	Thale cress	plastid	84.91	84.32
AT5G01530.1	Thale cress	plastid	85.26	83.79
TraesCS2D01G209900.1	Wheat	plastid	83.51	83.22
TraesCS2B01G233400.1	Wheat	plastid	83.51	83.22
TraesCS2A01G206200.1	Wheat	plastid	83.51	83.22
Zm00001d006587_P001	Maize	plastid	83.86	82.13
EER99537	Sorghum	plastid	82.81	81.94
Zm00001d021763_P001	Maize	plastid	83.16	81.44
Os07t0558400-01	Rice	plasma membrane, plastid	82.11	80.69
VIT_08s0007g02190.t01	Wine grape	plastid	84.91	70.76
HORVU5Hr1G013200.1	Barley	plastid	68.77	69.26
PGSC0003DMT400060313	Potato	plastid	34.04	39.43
PGSC0003DMT400059995	Potato	plastid	34.04	39.43
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	21.75	38.75
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	21.75	38.75
PGSC0003DMT400083158	Potato	plastid	32.28	36.8
PGSC0003DMT400050232	Potato	plastid	31.93	36.26
PGSC0003DMT400021389	Potato	plastid	33.68	36.23
PGSC0003DMT400092927	Potato	plastid	33.68	36.23
PGSC0003DMT400021390	Potato	plastid	32.98	36.15
PGSC0003DMT400021391	Potato	plastid	32.98	36.15
PGSC0003DMT400021392	Potato	plastid	32.98	36.15
PGSC0003DMT400034897	Potato	plastid	32.98	35.88
PGSC0003DMT400021422	Potato	plastid	33.33	35.85
PGSC0003DMT400034896	Potato	plastid	33.33	35.58
PGSC0003DMT400034898	Potato	plastid	32.63	35.5
PGSC0003DMT400007514	Potato	plastid	32.28	35.38
PGSC0003DMT400037285	Potato	extracellular, vacuole	19.3	35.26
PGSC0003DMT400043054	Potato	plastid	32.98	35.21
PGSC0003DMT400034893	Potato	plastid	32.28	35.11
PGSC0003DMT400034892	Potato	plastid	32.28	35.11
PGSC0003DMT400034899	Potato	plastid	32.63	34.83
PGSC0003DMT400015740	Potato	plastid	31.93	34.34
PGSC0003DMT400010985	Potato	plastid	31.93	34.34
PGSC0003DMT400032790	Potato	plastid	30.53	33.98
PGSC0003DMT400034894	Potato	plastid	23.16	33.85
PGSC0003DMT400049550	Potato	plastid	30.88	33.59
PGSC0003DMT400022072	Potato	plastid	30.88	33.21
PGSC0003DMT400032791	Potato	plastid	29.12	32.42
PGSC0003DMT400022698	Potato	plastid	34.39	32.13
PGSC0003DMT400068129	Potato	plastid	30.53	30.53
PGSC0003DMT400020100	Potato	plastid	28.77	30.04
PGSC0003DMT400025715	Potato	plastid	32.28	28.93
PGSC0003DMT400019031	Potato	plastid	32.98	28.66
PGSC0003DMT400034902	Potato	plastid	12.98	28.24
PGSC0003DMT400054836	Potato	plastid	26.67	27.84
PGSC0003DMT400011381	Potato	plastid	22.81	24.44

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EntrezGene:102583949	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M1AFT5	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400008488	PGSC:PGSC0003DMG400008488	EnsemblPlants:PGSC0003DMT400021871
PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI0002955F8D	RefSeq:XP_006366348.1	SEG:seg

Description

Chloroplast pigment-binding protein CP29 [Source:PGSC_GENE;Acc:PGSC0003DMG400008488]

Coordinates

chr9:+:128542..130405

Molecular Weight (calculated)

31132.2 Da

IEP (calculated)

6.039

GRAVY (calculated)

-0.105

Length

285 amino acids

Sequence
(BLAST)

001: MATAAATSSF IGTRLPEIHS GAGRVQARFG FGQKKAAPKK AAKKQIPDRP LWYPGAKSPE YLDGSLVGDY GFDPFGLGKP AEYLQYDLDS LDQNLAKNLA
101: GDIIGTRTEV ADVKSTPFQP YSEVFGLQRF RECELIHGRW AMLATLGALT VEWLTGITWQ DAGKVELVEG SSYLGQPLPF SITTLIWIEV LVIGYIEFQR
201: NGELDPEKRL YPGGSFFDPL GLAADPEKKA TLQLAEIKHA RLAMVGFLGF AVQAAATGKG PLNNWATHLS DPLHTTIFDT FGFFS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.