CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	KRH42483	AT2G01950.1	19000166
AT5G01530.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75874	Soybean	mitochondrion, nucleus, plastid	97.93	97.93
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	47.59	94.52
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	38.62	93.33
Solyc09g014520.2.1	Tomato	plastid	89.31	90.88
PGSC0003DMT400021871	Potato	plastid	88.97	90.53
Bra029732.1-P	Field mustard	plastid	85.86	86.46
CDY44667	Canola	plastid	85.86	86.46
CDY53084	Canola	plastid	85.52	85.81
Bra028906.1-P	Field mustard	plastid	85.17	85.76
CDY04834	Canola	plastid	84.83	85.71
Os07t0558400-01	Rice	plasma membrane, plastid	85.17	85.17
AT3G08940.2	Thale cress	plastid	84.14	85.02
EER99537	Sorghum	plastid	83.45	84.03
TraesCS2D01G209900.1	Wheat	plastid	82.76	83.92
TraesCS2B01G233400.1	Wheat	plastid	82.76	83.92
TraesCS2A01G206200.1	Wheat	plastid	82.76	83.92
AT5G01530.1	Thale cress	plastid	83.79	83.79
Zm00001d021763_P001	Maize	plastid	83.79	83.51
Zm00001d006587_P001	Maize	plastid	83.45	83.16
KRG97750	Soybean	plastid	69.66	72.66
KRH31130	Soybean	nucleus, plastid	68.62	70.57
VIT_08s0007g02190.t01	Wine grape	plastid	83.1	70.47
KRH08634	Soybean	endoplasmic reticulum	17.24	40.32
KRH08384	Soybean	nucleus, plastid	33.1	39.02
KRH70044	Soybean	mitochondrion, nucleus, plastid	33.1	39.02
KRH54568	Soybean	nucleus, plastid	31.03	35.71
KRH63318	Soybean	plastid	30.69	35.32
KRH08672	Soybean	mitochondrion, nucleus, plastid	31.38	34.47
KRH08669	Soybean	nucleus, plastid	31.38	34.47
KRH08676	Soybean	nucleus, plastid	31.38	34.47
KRH27171	Soybean	mitochondrion, nucleus, plastid	31.72	34.33
KRH12566	Soybean	plastid	30.69	34.23
KRH37524	Soybean	plastid	30.69	34.23
KRH58441	Soybean	mitochondrion, plastid	31.03	34.22
KRH22164	Soybean	nucleus, plastid	31.38	34.08
KRH42317	Soybean	mitochondrion, nucleus, plastid	30.69	33.84
KRH70280	Soybean	plastid	28.62	33.33
KRH14122	Soybean	nucleus, plastid	30.34	33.21
KRH74003	Soybean	nucleus, plastid	30.34	33.21
KRH06319	Soybean	nucleus, plastid	30.34	32.59
KRH43915	Soybean	mitochondrion, nucleus, plastid	28.97	32.18
KRH58296	Soybean	plastid	26.9	32.1
KRH10515	Soybean	mitochondrion, nucleus, plastid	28.62	31.92
KRH42185	Soybean	mitochondrion, nucleus, plastid	27.93	31.4
KRH47742	Soybean	nucleus	29.66	30.5
KRH09238	Soybean	mitochondrion, nucleus, plastid	30.34	30.45
KRH38736	Soybean	nucleus, plastid	30.34	30.24
KRH74072	Soybean	mitochondrion, nucleus, plastid	28.28	29.71
KRH34336	Soybean	plastid	29.31	29.62
KRG92462	Soybean	nucleus, plastid	29.31	29.51
KRH14048	Soybean	nucleus, plastid	27.93	29.35
KRH51989	Soybean	nucleus	28.62	29.12
KRH68993	Soybean	plastid	29.66	27.92
KRH06016	Soybean	plastid	31.03	27.11
KRH17548	Soybean	cytosol, peroxisome, plastid	17.93	25.74
KRH61286	Soybean	mitochondrion	14.48	19.18
KRH58809	Soybean	mitochondrion	20.34	18.61

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	UniProt:A0A0R0KFE8	EMBL:ACUP02001499	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_03G060300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlants:KRH65776	ProteinID:KRH65776	ProteinID:KRH65776.1
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI0006EDF9E5	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:8759685..8761779

Molecular Weight (calculated)

31443.4 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.150

Length

290 amino acids

Sequence
(BLAST)

001: MATATAAATS SFMGTRLLEA HSGAGRVHAR FGFGKKKAPA PKKASRGSGR DTDRPLWYPG AKAPEYLDGS LVGDYGFDPF GLGKPAEYLQ FELDSLDQNL
101: AKNVAGDIIG TRTELADVKS TPFQPYSEVF GLQRFRECEL IHGRWAMLAT LGALTVEWLT GVTWQDAGKV ELVEGSSYLG QPLPFSITTL IWIEVLVIGY
201: IEFQRNAELD PEKRLYPGGS YFDPLGLASD PEKKATLQLA EIKHARLAMV GFLGFAVQAA ATGKGPLNNW ATHLSDPLHT TIIDTFSSSS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.