CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	39.93	95.83
Zm00001d021763_P001	Maize	plastid	94.79	93.81
Zm00001d006587_P001	Maize	plastid	94.44	93.47
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	46.18	91.1
Os07t0558400-01	Rice	plasma membrane, plastid	90.62	90.0
TraesCS2B01G233400.1	Wheat	plastid	87.85	88.46
TraesCS2D01G209900.1	Wheat	plastid	87.5	88.11
TraesCS2A01G206200.1	Wheat	plastid	87.5	88.11
KRH75874	Soybean	mitochondrion, nucleus, plastid	85.07	84.48
Solyc09g014520.2.1	Tomato	plastid	83.33	84.21
Bra029732.1-P	Field mustard	plastid	84.03	84.03
CDY44667	Canola	plastid	84.03	84.03
CDY53084	Canola	plastid	84.03	83.74
KRH65776	Soybean	nucleus, plastid	84.03	83.45
PGSC0003DMT400021871	Potato	plastid	81.94	82.81
AT3G08940.2	Thale cress	plastid	82.29	82.58
AT5G01530.1	Thale cress	plastid	82.64	82.07
Bra028906.1-P	Field mustard	plastid	81.94	81.94
CDY04834	Canola	plastid	81.6	81.88
VIT_08s0007g02190.t01	Wine grape	plastid	80.56	67.84
EER97145	Sorghum	extracellular, vacuole	23.61	39.77
EES04597	Sorghum	plastid	33.68	39.59
KXG36552	Sorghum	plastid	32.29	35.36
EES18693	Sorghum	plastid	32.29	35.09
EER97143	Sorghum	plastid	31.6	34.73
EES01022	Sorghum	plastid	31.94	34.72
KXG25214	Sorghum	plastid	30.21	34.66
OQU90095	Sorghum	plastid	31.6	33.96
OQU87124	Sorghum	plastid	30.9	33.71
OQU82564	Sorghum	plastid	29.51	33.33
KXG35708	Sorghum	plastid	31.6	33.09
EES07574	Sorghum	plastid	29.51	31.95
EES09551	Sorghum	plastid	31.25	31.91
EER93861	Sorghum	plastid	28.82	31.68
KXG20345	Sorghum	plastid	26.74	29.06
EER96508	Sorghum	plastid	30.56	28.03
KXG33266	Sorghum	extracellular	20.14	25.11

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EntrezGene:8081744	UniProt:C5XBI9	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlants:EER99537	ProteinID:EER99537	ProteinID:EER99537.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	EnsemblPlantsGene:SORBI_3002G338000
SUPFAM:SSF103511	unigene:Sbi.17755	UniParc:UPI0001A84228	RefSeq:XP_002463016.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:70530638..70532022

Molecular Weight (calculated)

31268.3 Da

IEP (calculated)

5.387

GRAVY (calculated)

-0.063

Length

288 amino acids

Sequence
(BLAST)

001: MASSVAAAAS TFLGTRLSDP APQNGRIVAR FGFGKPKKAA APKKVSKISS DRPLWFPGAV APDYLDGTLV GDYGFDPFGL GKPVEYLQFD LDSLDQNLAK
101: NEPGVVIGTR FESSDVKSTP LQPYSEVFGL QRFRECELIH GRWAMLATLG ALSVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDPE KRLYPGGSYF DPLGLAADPE KKERLQLAEI KHARLAMVAF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI FDTFGASS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.