Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0720500-01 | Rice | plastid | 57.58 | 50.19 |
| VIT_10s0003g02900.t01 | Wine grape | plastid | 57.14 | 50.0 |
| VIT_10s0003g02890.t01 | Wine grape | plastid | 57.14 | 50.0 |
| EES01022 | Sorghum | plastid | 57.14 | 49.81 |
| EES18693 | Sorghum | plastid | 57.14 | 49.81 |
| EER97145 | Sorghum | extracellular, vacuole | 36.8 | 49.71 |
| OQU87124 | Sorghum | plastid | 56.71 | 49.62 |
| EER97143 | Sorghum | plastid | 56.28 | 49.62 |
| PGSC0003DMT400034902 | Potato | plastid | 27.71 | 48.85 |
| VIT_07s0005g02220.t01 | Wine grape | plastid | 55.41 | 48.67 |
| VIT_19s0014g00160.t01 | Wine grape | plastid | 55.84 | 48.31 |
| GSMUA_Achr2P09300_001 | Banana | plasma membrane, plastid, unclear | 55.41 | 47.94 |
| VIT_12s0028g00320.t01 | Wine grape | plastid | 54.98 | 47.04 |
| TraesCS1D01G375200.1 | Wheat | plastid | 30.3 | 45.45 |
| EER93861 | Sorghum | plastid | 50.22 | 44.27 |
| OQU90095 | Sorghum | plastid | 49.35 | 42.54 |
| GSMUA_Achr5P09230_001 | Banana | cytosol, extracellular, plastid | 21.64 | 37.59 |
| GSMUA_Achr4P07890_001 | Banana | plastid | 22.08 | 32.08 |
| EES09551 | Sorghum | plastid | 33.33 | 27.3 |
| KXG36552 | Sorghum | plastid | 27.71 | 24.33 |
| EES04597 | Sorghum | plastid | 25.54 | 24.08 |
| EER96508 | Sorghum | plastid | 31.6 | 23.25 |
| KXG20345 | Sorghum | plastid | 25.97 | 22.64 |
| EES07574 | Sorghum | plastid | 25.11 | 21.8 |
| KXG25214 | Sorghum | plastid | 22.51 | 20.72 |
| EER99537 | Sorghum | plastid | 25.11 | 20.14 |
| OQU82564 | Sorghum | plastid | 22.08 | 20.0 |
| KXG35708 | Sorghum | plastid | 22.94 | 19.27 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | UniProt:A0A1B6Q5S8 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| InterPro:IPR023329 | EnsemblPlants:KXG33266 | ProteinID:KXG33266 | ProteinID:KXG33266.1 | PFAM:PF00504 | PANTHER:PTHR21649 |
| PANTHER:PTHR21649:SF54 | EnsemblPlantsGene:SORBI_3003G279400 | SUPFAM:SSF103511 | UniParc:UPI00081AD17D | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:+:61507304..61508484
Molecular Weight (calculated)
25164.2 Da
IEP (calculated)
9.388
GRAVY (calculated)
-0.223
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MILIKLIPKY KLISTCKLSI SSLTITIGPW YGPDHVLYLG PLSGAPPSYL TGEFPGDYGW NTAGLSADPE TFAKNRELEV IHYRWAMLGA LGCIFPGAAR
101: PQRRRQTDVT MQCDWPIANK SHRGRSAKWG PWRGTGWPVR WAAVGEVVDP LYPGGSFDPL GLADDPEKLA ELKVKEIKNG RLGGSPCFPC SGSLSGLSSP
201: ARGHLRTWPT ISLTPVSNNA WAYATNFVPG N
101: PQRRRQTDVT MQCDWPIANK SHRGRSAKWG PWRGTGWPVR WAAVGEVVDP LYPGGSFDPL GLADDPEKLA ELKVKEIKNG RLGGSPCFPC SGSLSGLSSP
201: ARGHLRTWPT ISLTPVSNNA WAYATNFVPG N
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.