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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr5P09230_001 Banana cytosol, extracellular, plastid 50.0 99.25
VIT_10s0003g02890.t01 Wine grape plastid 98.86 98.86
PGSC0003DMT400035007 Potato cytosol, extracellular, vacuole 58.33 96.25
PGSC0003DMT400035006 Potato cytosol, extracellular, vacuole 58.33 96.25
VIT_19s0014g00160.t01 Wine grape plastid 91.67 90.64
TraesCS6B01G122500.1 Wheat cytosol, extracellular, plastid 54.92 90.62
TraesCS6B01G122700.1 Wheat mitochondrion, plastid 71.97 89.62
VIT_07s0005g02220.t01 Wine grape plastid 89.02 89.35
TraesCS5B01G463100.1 Wheat plastid 89.77 89.1
TraesCS5D01G464700.1 Wheat plastid 89.77 89.1
VIT_12s0028g00320.t01 Wine grape plastid 90.91 88.89
Os01t0720500-01 Rice plastid 89.02 88.68
GSMUA_Achr4P07890_001 Banana plastid 53.41 88.68
TraesCS1B01G433300.1 Wheat plastid 89.02 88.35
TraesCS5A01G454300.1 Wheat plastid 89.02 88.35
TraesCS5B01G463000.1 Wheat plastid 89.02 88.35
TraesCS1B01G432700.1 Wheat plastid 89.02 88.35
TraesCS1A01G403300.1 Wheat plastid 89.02 88.35
TraesCS5D01G357600.1 Wheat plastid 88.64 88.3
TraesCS5A01G350600.1 Wheat plastid 88.64 88.3
TraesCS1B01G317500.1 Wheat plastid 51.14 88.24
TraesCS5D01G464900.1 Wheat plastid 88.64 87.97
TraesCS1A01G403800.1 Wheat plastid 88.64 87.97
TraesCS1D01G411300.1 Wheat plastid 88.64 87.97
TraesCS5A01G454200.1 Wheat plastid 88.64 87.97
TraesCS5B01G462800.1 Wheat plastid 88.64 87.97
TraesCSU01G167700.1 Wheat plastid 88.26 87.92
TraesCS5B01G353200.1 Wheat plastid 88.26 87.92
Zm00001d011285_P001 Maize plastid 87.88 87.88
TraesCS1D01G411600.1 Wheat plastid 88.26 87.59
TraesCS5D01G464800.1 Wheat plastid 88.26 87.59
TraesCS1D01G375100.1 Wheat plastid 87.88 87.55
TraesCS7B01G103300.1 Wheat plastid 87.88 87.22
TraesCS6D01G088800.1 Wheat plastid 87.88 87.22
TraesCS1B01G388200.1 Wheat plastid 87.5 87.17
TraesCS1D01G375000.1 Wheat plastid 78.79 87.03
TraesCS7D01G199400.1 Wheat plastid 87.5 86.84
TraesCS1D01G374900.1 Wheat plastid 87.12 86.79
EES01022 Sorghum plastid 87.12 86.79
Zm00001d044401_P001 Maize plastid 86.74 86.74
Zm00001d044399_P001 Maize plastid 86.74 86.74
Zm00001d044402_P001 Maize plastid 86.74 86.74
TraesCSU01G250000.1 Wheat plastid 87.12 86.47
TraesCS7B01G103400.1 Wheat plastid 87.12 86.47
TraesCS7A01G238400.1 Wheat plastid 87.12 86.47
TraesCS6A01G094300.1 Wheat plastid 87.12 86.47
TraesCS1B01G388500.1 Wheat plastid 86.74 86.42
TraesCS1B01G388300.1 Wheat plastid 86.74 86.42
Zm00001d044396_P001 Maize plastid 86.36 86.36
OQU87124 Sorghum plastid 86.36 86.36
TraesCS6A01G094600.1 Wheat plastid 83.71 86.33
TraesCS6B01G122800.1 Wheat plastid 86.74 86.09
TraesCS6A01G094100.1 Wheat plastid 86.74 86.09
TraesCS6A01G093700.1 Wheat plastid 86.74 86.09
TraesCS6D01G088600.1 Wheat plastid 85.98 85.34
TraesCS5B01G462900.1 Wheat plastid 65.53 84.8
TraesCS7D01G199500.1 Wheat plastid 85.23 84.59
TraesCS6D01G088700.1 Wheat plastid 73.11 83.91
TraesCS6B01G122600.1 Wheat plastid 84.09 83.46
PGSC0003DMT400034902 Potato plastid 41.29 83.21
TraesCS7A01G237100.1 Wheat plastid 83.71 83.08
VIT_12s0057g00630.t01 Wine grape plastid 79.17 78.87
TraesCS6A01G094500.1 Wheat plastid 86.74 75.08
TraesCS6A01G094200.1 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 87.12 70.34
TraesCS1D01G375200.1 Wheat plastid 40.91 70.13
TraesCS6A01G094400.1 Wheat plastid 87.88 69.67
VIT_00s0181g00180.t01 Wine grape plastid 69.7 68.4
VIT_00s0181g00200.t01 Wine grape plastid 69.7 68.4
VIT_19s0014g03660.t01 Wine grape plastid 68.56 68.05
HORVU1Hr1G088930.2 Barley endoplasmic reticulum 26.14 58.47
KXG33266 Sorghum extracellular 50.0 57.14
VIT_13s0019g04140.t01 Wine grape plastid 34.85 37.7
VIT_11s0016g00730.t01 Wine grape plastid 35.23 35.91
VIT_18s0122g00430.t01 Wine grape plastid 44.7 35.65
VIT_01s0010g03620.t01 Wine grape plastid 35.23 34.32
VIT_17s0000g06350.t01 Wine grape plastid 32.2 33.73
VIT_15s0024g00040.t01 Wine grape plastid 34.85 33.58
VIT_18s0001g10550.t01 Wine grape plastid 31.82 31.82
VIT_18s0089g01170.t01 Wine grape cytosol, extracellular, plastid 44.7 29.35
VIT_12s0055g01110.t01 Wine grape plastid 28.03 28.79
VIT_08s0007g02190.t01 Wine grape plastid 35.98 27.78
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10EntrezGene:100241745wikigene:100241745EMBL:AM447362ProteinID:CAN78667
ProteinID:CAN78667.1ProteinID:CCB55766ProteinID:CCB55766.1InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sf
UniProt:F6HMH7EMBL:FN595992GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009416GO:GO:0009507GO:GO:0009522GO:GO:0009523GO:GO:0009535GO:GO:0009536
GO:GO:0009579GO:GO:0009628GO:GO:0009765GO:GO:0009768GO:GO:0009941GO:GO:0009987
GO:GO:0010287GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0018298
GO:GO:0019538GO:GO:0031409InterPro:IPR023329EntrezGene:LOC100241745wikigene:LOC100241745PFAM:PF00504
PANTHER:PTHR21649PANTHER:PTHR21649:SF55SUPFAM:SSF103511UniParc:UPI00015CCE09ArrayExpress:VIT_10s0003g02900EnsemblPlantsGene:VIT_10s0003g02900
EnsemblPlants:VIT_10s0003g02900.t01unigene:Vvi.24360RefSeq:XP_002275075RefSeq:XP_002275075.1::
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:F6HMH7]
Coordinates
chr10:+:5026578..5027393
Molecular Weight (calculated)
27942.4 Da
IEP (calculated)
4.750
GRAVY (calculated)
0.056
Length
264 amino acids
Sequence
(BLAST)
001: MAASTMALSS PSFAGTTVKL GPNASDILGG GRVSMRKTGF KAPSGSPWYG PDRVLYLGPL SGDPPSYLTG EFPGDYGWDT AGLSADPETF AKNRELEVIH
101: CRWAMLGALG CVFPELLSRN GVKFGEAVWF KAGAQIFSEG GLDYLGNPSL IHAQSILAIW ACQVILMGAV EGYRIAGGPL GEVTDPLYPG GSFDPLGLAD
201: DPEAFAELKV KEIKNGRLAM FSMFGFFVQA IVTGKGPLEN LADHLADPVN NNAWAYATNF VPGK
Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)
001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.