Factsheet for TraesCS1B01G317500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	83.01	79.38
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	83.01	79.38
TraesCS6B01G122500.1	Wheat	cytosol, extracellular, plastid	80.39	76.88
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	63.4	72.93
GSMUA_Achr4P07890_001	Banana	plastid	58.82	56.6
TraesCS5B01G353200.1	Wheat	plastid	92.81	53.58
Os01t0720500-01	Rice	plastid	92.16	53.21
TraesCS5B01G463100.1	Wheat	plastid	92.16	53.01
TraesCS1B01G432700.1	Wheat	plastid	91.5	52.63
TraesCS1B01G388300.1	Wheat	plastid	90.85	52.45
TraesCS1B01G388200.1	Wheat	plastid	90.85	52.45
TraesCS5B01G463000.1	Wheat	plastid	90.85	52.26
TraesCS5B01G462800.1	Wheat	plastid	90.85	52.26
TraesCS1B01G433300.1	Wheat	plastid	90.85	52.26
TraesCS7B01G103300.1	Wheat	plastid	90.2	51.88
TraesCS6B01G122800.1	Wheat	plastid	90.2	51.88
VIT_10s0003g02890.t01	Wine grape	plastid	88.89	51.52
TraesCS1B01G388500.1	Wheat	plastid	88.89	51.32
VIT_19s0014g00160.t01	Wine grape	plastid	89.54	51.31
VIT_10s0003g02900.t01	Wine grape	plastid	88.24	51.14
TraesCS6B01G122600.1	Wheat	plastid	88.89	51.13
TraesCS7B01G103400.1	Wheat	plastid	88.89	51.13
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	88.24	50.56
TraesCS6B01G122700.1	Wheat	mitochondrion, plastid	69.93	50.47
VIT_12s0028g00320.t01	Wine grape	plastid	88.24	50.0
VIT_07s0005g02220.t01	Wine grape	plastid	84.31	49.05
TraesCS5B01G322900.1	Wheat	plastid	74.51	43.35
TraesCS1B01G451100.1	Wheat	plastid	69.28	39.55
TraesCS5B01G462900.1	Wheat	plastid	50.33	37.75
TraesCS7B01G192500.1	Wheat	plastid	37.25	23.27
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	42.48	22.73
TraesCS2B01G220100.1	Wheat	golgi, plastid	36.6	21.96
TraesCS5B01G175000.1	Wheat	plastid	43.79	21.68
TraesCS5B01G210800.2	Wheat	cytosol, plastid	33.33	21.43
TraesCS6B01G350500.1	Wheat	plastid	35.29	21.01
TraesCS5B01G227900.1	Wheat	plastid	30.72	19.18
TraesCS2B01G233400.1	Wheat	plastid	34.64	18.53
TraesCS6B01G191500.1	Wheat	plastid	32.03	18.22
TraesCS2B01G340300.1	Wheat	plastid	28.1	16.86
TraesCS6B01G312900.1	Wheat	plastid	5.23	5.52

Protein Annotations

EnsemblPlants:TraesCS1B01G317500.1	EnsemblPlantsGene:TraesCS1B01G317500	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF25	PFAM:PF00504
SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:542579175..542579972

Molecular Weight (calculated)

16071.4 Da

IEP (calculated)

4.584

GRAVY (calculated)

0.332

Length

153 amino acids

Sequence
(BLAST)

001: MALSTMALSS PALAAKQAKI ASFNIFSEGG LDYLGNPSLV HAQSILAIWA CQVVLMGAVE GYRVAGGPLG EIVDPLYPGG SFDPLGLADD PEAFAELKVK
101: EIKNGRLAMF SMFGFFVQAI VTGKGPLENL ADHLADPVNN NAWAFATNFV PGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.