Factsheet for TraesCS5B01G227900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	100.0	100.0
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	99.59	99.59
HORVU5Hr1G066280.1	Barley	plastid	99.59	99.59
Zm00001d050403_P001	Maize	plastid	84.49	84.84
Zm00001d032197_P001	Maize	plastid	85.31	84.62
KXG25214	Sorghum	plastid	85.31	83.27
Os08t0435900-01	Rice	mitochondrion	82.04	82.38
GSMUA_Achr4P24090_001	Banana	unclear	77.96	75.79
GSMUA_Achr2P14960_001	Banana	plastid	76.73	74.9
KRH54568	Soybean	nucleus, plastid	76.73	74.6
KRH63318	Soybean	plastid	76.33	74.21
Bra018144.1-P	Field mustard	plastid	75.92	73.81
CDX99044	Canola	plastid	75.92	73.81
CDY47410	Canola	plastid	75.92	73.81
AT3G47470.1	Thale cress	plastid	75.51	73.71
Solyc06g069730.2.1	Tomato	plastid	75.1	73.6
VIT_17s0000g06350.t01	Wine grape	plastid	75.51	73.41
PGSC0003DMT400050232	Potato	plastid	75.1	73.31
PGSC0003DMT400083158	Potato	plastid	74.69	73.2
Solyc03g115900.2.1	Tomato	plastid	74.69	72.91
TraesCS2B01G220100.1	Wheat	golgi, plastid	47.35	45.49
TraesCS5B01G210800.2	Wheat	cytosol, plastid	41.22	42.44
TraesCS6B01G350500.1	Wheat	plastid	42.45	40.47
TraesCS7B01G192500.1	Wheat	plastid	38.78	38.78
TraesCS6B01G312900.1	Wheat	plastid	22.45	37.93
TraesCS6B01G191500.1	Wheat	plastid	40.0	36.43
TraesCS6B01G122500.1	Wheat	cytosol, extracellular, plastid	21.22	32.5
TraesCS6B01G122700.1	Wheat	mitochondrion, plastid	27.35	31.6
TraesCS2B01G340300.1	Wheat	plastid	32.65	31.37
TraesCS1B01G317500.1	Wheat	plastid	19.18	30.72
TraesCS2B01G233400.1	Wheat	plastid	35.1	30.07
TraesCS1B01G451100.1	Wheat	plastid	32.65	29.85
TraesCS5B01G353200.1	Wheat	plastid	32.24	29.81
TraesCS5B01G322900.1	Wheat	plastid	31.43	29.28
TraesCS5B01G463100.1	Wheat	plastid	31.43	28.95
TraesCS1B01G432700.1	Wheat	plastid	31.43	28.95
TraesCS1B01G388200.1	Wheat	plastid	31.02	28.68
TraesCS5B01G463000.1	Wheat	plastid	31.02	28.57
TraesCS5B01G462800.1	Wheat	plastid	30.61	28.2
TraesCS7B01G103300.1	Wheat	plastid	30.61	28.2
TraesCS1B01G433300.1	Wheat	plastid	30.61	28.2
TraesCS1B01G388500.1	Wheat	plastid	30.2	27.92
TraesCS6B01G122600.1	Wheat	plastid	30.2	27.82
TraesCS6B01G122800.1	Wheat	plastid	30.2	27.82
TraesCS7B01G103400.1	Wheat	plastid	29.8	27.44
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	31.84	27.27
TraesCS1B01G388300.1	Wheat	plastid	29.39	27.17
TraesCS5B01G462900.1	Wheat	plastid	19.59	23.53
TraesCS5B01G175000.1	Wheat	plastid	28.16	22.33

Protein Annotations

EnsemblPlants:TraesCS5B01G227900.1	EnsemblPlantsGene:TraesCS5B01G227900	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF4	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.4.1.4	:	:	:

Description

No Description!

Coordinates

chr5B:-:404190266..404191196

Molecular Weight (calculated)

26709.8 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.113

Length

245 amino acids

Sequence
(BLAST)

001: MSSVSARAPV AALRPAASAS SPRFLGDSGR VGLAKSTRRD VAVQAKGSWL PGLPSPAYLD GSLAGDNGFD PLALAEDPED LRWFVQAELV NGRWAMLGVA
101: GMLIPEVLTK AGLLNAPEWY DAGKETYFAS SSTLFVIEFI LFHYVEIRRW QDIKNPGSVN QDPIFKSYSL PPHECGYPGS VFNPLNFAPT LENKEKELAN
201: GRLAMLAFLG FLVQHNVTGK GPFENLQQHL ADPWHNTIIQ TISGQ

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.