Factsheet for HORVU5Hr1G066280.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 12481076
plastid: 15682463
plastid: 16758444
plastid: 17675669
plastid: 21440687

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 12481076 doi

L Zolla, S Rinalducci, AM Timperio, CG Huber

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy., Department of Environmental Sciences, University of Tuscia, Viterbo, Italy. zolla@unitus.it

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

msms PMID: 17675669 doi

S Frigerio, C Campoli, S Zorzan, LI Fantoni, C Crosatti, F Drepper, W Haehnel, L Cattivelli, T Morosinotto, R Bassi

LGBP, UMR 6191 CEA-CNRS-Université de la Méditerranée, Marseille 13288, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G227900.1	Wheat	plastid	99.59	99.59
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	99.59	99.59
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	99.18	99.18
Zm00001d050403_P001	Maize	plastid	84.08	84.43
Zm00001d032197_P001	Maize	plastid	84.9	84.21
KXG25214	Sorghum	plastid	84.9	82.87
Os08t0435900-01	Rice	mitochondrion	81.63	81.97
GSMUA_Achr4P24090_001	Banana	unclear	77.96	75.79
GSMUA_Achr2P14960_001	Banana	plastid	76.73	74.9
KRH54568	Soybean	nucleus, plastid	76.73	74.6
KRH63318	Soybean	plastid	76.33	74.21
Bra018144.1-P	Field mustard	plastid	75.92	73.81
CDX99044	Canola	plastid	75.92	73.81
CDY47410	Canola	plastid	75.92	73.81
AT3G47470.1	Thale cress	plastid	75.51	73.71
Solyc06g069730.2.1	Tomato	plastid	75.1	73.6
VIT_17s0000g06350.t01	Wine grape	plastid	75.51	73.41
PGSC0003DMT400050232	Potato	plastid	75.1	73.31
PGSC0003DMT400083158	Potato	plastid	74.69	73.2
Solyc03g115900.2.1	Tomato	plastid	74.69	72.91
HORVU2Hr1G036960.4	Barley	plastid	46.12	40.07
HORVU5Hr1G062240.1	Barley	plastid	44.9	38.6
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	17.96	36.67
HORVU7Hr1G046320.2	Barley	plastid	38.37	32.98
HORVU2Hr1G040780.7	Barley	plastid	32.65	29.41
HORVU5Hr1G087250.1	Barley	plastid	31.84	29.32
HORVU5Hr1G124160.1	Barley	plastid	31.84	29.32
HORVU1Hr1G078380.1	Barley	plastid	31.43	29.06
HORVU5Hr1G109250.1	Barley	plastid	31.43	28.95
HORVU1Hr1G088880.1	Barley	plastid	31.43	28.95
HORVU6Hr1G016880.1	Barley	plastid	30.61	28.2
HORVU6Hr1G091660.1	Barley	plastid	30.61	28.2
HORVU7Hr1G040370.1	Barley	plastid	30.61	28.2
HORVU6Hr1G016850.1	Barley	plastid	30.2	27.82
HORVU1Hr1G088900.1	Barley	plastid	29.8	27.44
HORVU1Hr1G088870.2	Barley	plastid	31.43	26.64
HORVU6Hr1G091650.1	Barley	plastid	30.61	26.41
HORVU6Hr1G016890.6	Barley	plastid	30.61	25.86
HORVU1Hr1G088920.3	Barley	plastid	30.2	25.0
HORVU5Hr1G109360.1	Barley	plastid	31.84	24.07
HORVU5Hr1G109260.4	Barley	plastid	31.84	24.07
HORVU7Hr1G040380.1	Barley	plastid	30.61	24.04
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	28.57	23.89
HORVU4Hr1G015260.2	Barley	plastid	27.76	23.61
HORVU1Hr1G089180.1	Barley	plastid	30.2	23.34
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	28.98	22.9
HORVU7Hr1G058120.1	Barley	plastid	31.02	22.89
HORVU5Hr1G082420.1	Barley	plastid	31.84	22.74
HORVU2Hr1G079910.1	Barley	cytosol	17.55	21.18
HORVU5Hr1G013200.1	Barley	plastid	24.08	20.85
HORVU1Hr1G088930.2	Barley	endoplasmic reticulum	8.57	17.8

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	EMBL:AK354173	EMBL:AK358587	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	UniProt:F2CRC1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G066280	EnsemblPlants:HORVU5Hr1G066280.1	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	UniParc:UPI0002004648	SEG:seg	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:F2CRC1]

Coordinates

chrchr5H:-:505799000..505800250

Molecular Weight (calculated)

26740.8 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.121

Length

245 amino acids

Sequence
(BLAST)

001: MSSVSARAPV AALRPAASAS SPRFLGDSGR VGLAKSTRRD VAVQAKGSWL PGLQSPAYLD GSLAGDNGFD PLALAEDPED LRWFVQAELV NGRWAMLGVA
101: GMLIPEVLTK AGLLNAPEWY DAGKETYFAS SSTLFVIEFI LFHYVEIRRW QDIKNPGSVN QDPIFKSYSL PPHECGYPGS VFNPLNFAPT LENKEKELAN
201: GRLAMLAFLG FLVQHNVTGK GPFENLQQHL ADPWHNTIIQ TISGQ

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.