Factsheet for VIT_19s0014g03660.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0181g00180.t01	Wine grape	plastid	93.23	92.19
VIT_00s0181g00200.t01	Wine grape	plastid	92.86	91.82
Bra002999.1-P	Field mustard	plastid	88.35	88.68
OQU90095	Sorghum	plastid	89.1	88.43
Zm00001d021784_P001	Maize	plastid	89.1	88.1
AT5G54270.1	Thale cress	plastid	87.59	87.92
Os07t0562700-01	Rice	extracellular, plastid	86.47	86.47
TraesCS1B01G451100.1	Wheat	plastid	84.21	83.58
TraesCS2A01G204800.1	Wheat	plastid	84.21	83.58
TraesCS1D01G428200.1	Wheat	plastid	84.21	83.58
HORVU2Hr1G040780.7	Barley	plastid	83.08	81.25
CDY28778	Canola	plastid	73.31	76.17
VIT_12s0057g00630.t01	Wine grape	plastid	69.92	70.19
VIT_19s0014g00160.t01	Wine grape	plastid	69.17	68.91
VIT_10s0003g02900.t01	Wine grape	plastid	68.05	68.56
VIT_07s0005g02220.t01	Wine grape	plastid	67.67	68.44
VIT_12s0028g00320.t01	Wine grape	plastid	68.8	67.78
VIT_10s0003g02890.t01	Wine grape	plastid	66.92	67.42
Zm00001d006592_P001	Maize	plastid	26.69	57.72
VIT_13s0019g04140.t01	Wine grape	plastid	32.33	35.25
VIT_15s0024g00040.t01	Wine grape	plastid	35.34	34.31
VIT_18s0122g00430.t01	Wine grape	plastid	41.35	33.23
VIT_11s0016g00730.t01	Wine grape	plastid	32.33	33.2
VIT_17s0000g06350.t01	Wine grape	plastid	29.7	31.35
VIT_18s0001g10550.t01	Wine grape	plastid	29.7	29.92
VIT_01s0010g03620.t01	Wine grape	plastid	29.7	29.15
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	42.86	28.36
VIT_12s0055g01110.t01	Wine grape	plastid	27.07	28.02
VIT_08s0007g02190.t01	Wine grape	plastid	32.71	25.44

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100260599	wikigene:100260599	EMBL:AM456451	ProteinID:CAN83151
ProteinID:CAN83151.1	ProteinID:CCB46388	ProteinID:CCB46388.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
UniProt:F6H2E4	EMBL:FN595229	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100260599	wikigene:LOC100260599	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	TIGR:TC52049	UniParc:UPI0001985884	ArrayExpress:VIT_19s0014g03660
EnsemblPlantsGene:VIT_19s0014g03660	EnsemblPlants:VIT_19s0014g03660.t01	unigene:Vvi.7927	RefSeq:XP_002284493	RefSeq:XP_002284493.1	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:F6H2E4]

Coordinates

chr19:-:3777470..3778927

Molecular Weight (calculated)

28825.6 Da

IEP (calculated)

5.050

GRAVY (calculated)

0.018

Length

266 amino acids

Sequence
(BLAST)

001: MLMAATASSS TVLRPTPFLG QTRGANSNPL RDVVPMGTGK YTMGNELWYG PDRVKYLGPF SAQTPSYLTG EFPGDYGWDT AGLSADPEAF ARNRALEVIH
101: GRWAMLGALG CITPEVLEKW LRVDFKEPIW FKAGAQIFSE GGLDYLGNPN LVHAQSILAV LGFQVVLMGL VEGFRINGLP GVGDGNNLYP GGQYFDPLGL
201: ADDPVTFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLLDHLDNP VANNAWVYAT KFVPGS

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.