Factsheet for VIT_12s0057g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P33040_001	Banana	plastid, unclear	93.58	93.94
PGSC0003DMT400015740	Potato	plastid	92.45	92.45
Solyc12g006140.1.1	Tomato	plastid	92.08	92.08
Solyc07g047850.2.1	Tomato	plastid	91.7	91.7
PGSC0003DMT400010985	Potato	plastid	91.7	91.7
KRH74003	Soybean	nucleus, plastid	91.7	91.7
KRH14122	Soybean	nucleus, plastid	91.32	91.32
CDY15050	Canola	plastid	90.57	90.57
Bra013183.1-P	Field mustard	plastid	90.19	90.19
CDX93077	Canola	plastid	90.19	90.19
Os03t0592500-01	Rice	extracellular	89.06	89.73
AT2G05070.1	Thale cress	plastid	89.43	89.43
Zm00001d033136_P001	Maize	plastid	87.17	88.85
Zm00001d033132_P001	Maize	plastid	87.17	88.85
CDY49770	Canola	plastid	89.06	88.72
CDY13732	Canola	plastid	89.06	88.72
Bra025297.1-P	Field mustard	plastid	89.06	88.72
CDY20039	Canola	plastid	88.68	88.68
Bra039070.1-P	Field mustard	plastid	88.68	88.68
CDY03989	Canola	plastid	88.68	88.35
CDY00149	Canola	plastid	88.68	88.35
EER93861	Sorghum	plastid	87.17	88.17
CDX83726	Canola	plastid	88.3	87.97
TraesCS5A01G322500.1	Wheat	plastid	86.42	87.07
TraesCS5B01G322900.1	Wheat	plastid	86.42	87.07
TraesCS5D01G329200.1	Wheat	plastid	86.42	87.07
Bra033022.1-P	Field mustard	plastid	83.4	85.66
VIT_07s0005g02220.t01	Wine grape	plastid	80.75	81.37
AT3G27690.2	Thale cress	golgi, plastid	89.43	79.53
VIT_10s0003g02900.t01	Wine grape	plastid	78.87	79.17
VIT_10s0003g02890.t01	Wine grape	plastid	78.11	78.41
VIT_19s0014g00160.t01	Wine grape	plastid	78.87	78.28
VIT_12s0028g00320.t01	Wine grape	plastid	79.25	77.78
Zm00001d013766_P001	Maize	plastid	40.0	73.61
VIT_00s0181g00200.t01	Wine grape	plastid	71.7	70.63
VIT_00s0181g00180.t01	Wine grape	plastid	71.7	70.63
VIT_19s0014g03660.t01	Wine grape	plastid	70.19	69.92
AT2G05100.2	Thale cress	plastid	82.26	68.77
HORVU5Hr1G082420.1	Barley	plastid	86.79	67.06
VIT_13s0019g04140.t01	Wine grape	plastid	32.83	35.66
VIT_18s0122g00430.t01	Wine grape	plastid	42.64	34.14
VIT_15s0024g00040.t01	Wine grape	plastid	33.58	32.48
VIT_01s0010g03620.t01	Wine grape	plastid	33.21	32.47
VIT_11s0016g00730.t01	Wine grape	plastid	31.32	32.05
VIT_17s0000g06350.t01	Wine grape	plastid	29.06	30.56
VIT_18s0001g10550.t01	Wine grape	plastid	29.81	29.92
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	43.4	28.61
VIT_12s0055g01110.t01	Wine grape	plastid	25.28	26.07
VIT_08s0007g02190.t01	Wine grape	plastid	32.45	25.15

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100254533	wikigene:100254533	UniProt:A5ASG6	EMBL:AM433852
ProteinID:CAN71610	ProteinID:CAN71610.1	ProteinID:CCB51720	ProteinID:CCB51720.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:FN595759	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100254533	wikigene:LOC100254533	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511	TIGR:TC54828	UniParc:UPI000151F742	ArrayExpress:VIT_12s0057g00630
EnsemblPlantsGene:VIT_12s0057g00630	EnsemblPlants:VIT_12s0057g00630.t01	RefSeq:XP_002271687	RefSeq:XP_002271687.1	SEG:seg	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A5ASG6]

Coordinates

chr12:+:9272280..9273816

Molecular Weight (calculated)

28469.1 Da

IEP (calculated)

5.760

GRAVY (calculated)

-0.020

Length

265 amino acids

Sequence
(BLAST)

001: MATSAIQRSA FAGQTALKQP NELVRKVGGL GGGRITMRRT VKSTPQSIWY GPDRPKYLGP FSEQTPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPEILSK NGVKFGEAVW FKAGAQIFSE GGLDYLGNPN LVHAQSILAI WACQVVLMGF VEGYRVGGGP LGEGLDAIYP GGAFDPLGLA
201: DDPDAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPIE NLVDHLADPV ANNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G05070.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS SDLIQKVGVL GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGK

Arabidopsis Description

LHCB2.2Chlorophyll a-b binding protein 2.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.