Factsheet for TraesCS5A01G322500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430
plastid: 22736107
plastid: 23683508
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 23683508 doi

ZH He, HW Li, Y Shen, ZS Li, H Mi

National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G329200.1	Wheat	plastid	100.0	100.0
TraesCS5B01G322900.1	Wheat	plastid	100.0	100.0
Os03t0592500-01	Rice	extracellular	94.68	94.68
Zm00001d033136_P001	Maize	plastid	90.87	91.92
Zm00001d033132_P001	Maize	plastid	90.87	91.92
EER93861	Sorghum	plastid	91.25	91.6
VIT_12s0057g00630.t01	Wine grape	plastid	87.07	86.42
PGSC0003DMT400015740	Potato	plastid	85.55	84.91
KRH14122	Soybean	nucleus, plastid	85.17	84.53
KRH74003	Soybean	nucleus, plastid	85.17	84.53
GSMUA_Achr4P33040_001	Banana	plastid, unclear	84.79	84.47
Solyc07g047850.2.1	Tomato	plastid	84.79	84.15
CDY15050	Canola	plastid	84.79	84.15
AT2G05070.1	Thale cress	plastid	84.41	83.77
CDX93077	Canola	plastid	84.41	83.77
Bra013183.1-P	Field mustard	plastid	84.41	83.77
CDY20039	Canola	plastid	84.03	83.4
PGSC0003DMT400010985	Potato	plastid	84.03	83.4
Bra039070.1-P	Field mustard	plastid	84.03	83.4
Bra025297.1-P	Field mustard	plastid	84.03	83.08
CDX83726	Canola	plastid	84.03	83.08
CDY49770	Canola	plastid	84.03	83.08
CDY13732	Canola	plastid	84.03	83.08
CDY00149	Canola	plastid	84.03	83.08
Solyc12g006140.1.1	Tomato	plastid	83.65	83.02
CDY03989	Canola	plastid	83.65	82.71
Bra033022.1-P	Field mustard	plastid	78.71	80.23
HORVU5Hr1G082420.1	Barley	plastid	99.24	76.09
Zm00001d013766_P001	Maize	plastid	41.44	75.69
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	47.91	75.45
TraesCS7A01G276400.1	Wheat	plastid	74.52	75.38
TraesCS1A01G403300.1	Wheat	plastid	76.05	75.19
TraesCS5A01G350600.1	Wheat	plastid	75.29	74.72
TraesCS1A01G403800.1	Wheat	plastid	75.29	74.44
TraesCS5A01G454200.1	Wheat	plastid	75.29	74.44
TraesCS1A01G306600.1	Wheat	plastid	74.9	74.34
TraesCS6A01G094600.1	Wheat	plastid	72.24	74.22
AT3G27690.2	Thale cress	golgi, plastid	84.03	74.16
TraesCS7A01G238400.1	Wheat	plastid	74.9	74.06
TraesCS5A01G454300.1	Wheat	plastid	74.52	73.68
TraesCS6A01G094300.1	Wheat	plastid	74.52	73.68
TraesCS6A01G093700.1	Wheat	plastid	73.38	72.56
TraesCS6A01G094100.1	Wheat	plastid	73.38	72.56
TraesCS7A01G237100.1	Wheat	plastid	70.72	69.92
TraesCS2A01G204800.1	Wheat	plastid	70.72	69.4
AT2G05100.2	Thale cress	plastid	78.33	64.98
TraesCS6A01G094500.1	Wheat	plastid	74.9	64.59
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	74.52	59.94
TraesCS6A01G094400.1	Wheat	plastid	74.52	58.86
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	45.25	41.32
TraesCS5A01G177700.1	Wheat	plastid	41.44	35.16
TraesCS7A01G227100.1	Wheat	plastid	31.56	33.6
TraesCS2A01G187200.1	Wheat	plastid	31.94	32.68
TraesCS6A01G319700.1	Wheat	plastid	31.56	32.68
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	29.28	31.43
TraesCS6A01G159800.1	Wheat	plastid	30.42	29.74
TraesCS2A01G206200.1	Wheat	plastid	30.8	28.32
TraesCS5A01G213000.1	Wheat	plastid	28.52	27.47
TraesCS2A01G342600.1	Wheat	plastid	25.48	26.27

Protein Annotations

EnsemblPlants:TraesCS5A01G322500.1	EnsemblPlantsGene:TraesCS5A01G322500	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:

Description

No Description!

Coordinates

chr5A:+:535011819..535012951

Molecular Weight (calculated)

28340.7 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.029

Length

263 amino acids

Sequence
(BLAST)

001: MAASALHQTT SFLGTAPRRD DLVRSVGDFG GRITMRRTVK SAPQSIWYGP DRPKYLGPFS EQTPSYLTGE FPGDYGWDTA GLSADPETFA KNRELEVIHS
101: RWAMLGALGC VFPEILSKNG IKFGEAVWFK AGAQIFSEGG LDYLGNPNLV HAQSILAIWA VQVVLMGFIE GYRVGGGPLG EGLDIIYPGG AFDPLGLADD
201: PDTAAELKVK ELKNGRLAMF SMFGFFVQAI VTGKGPVENL FDHVADPVNN NAWAFATNFA PGS

Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)

001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK

Arabidopsis Description

LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.