Factsheet for TraesCS1A01G306600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G306200.1	Wheat	plastid	97.74	98.48
TraesCS5A01G350600.1	Wheat	plastid	92.45	92.45
TraesCS5A01G454200.1	Wheat	plastid	92.08	91.73
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	57.74	91.62
TraesCS1A01G403300.1	Wheat	plastid	91.7	91.35
TraesCS7A01G276400.1	Wheat	plastid	89.06	90.77
TraesCS5A01G454300.1	Wheat	plastid	90.94	90.6
TraesCS7A01G238400.1	Wheat	plastid	90.19	89.85
TraesCS6A01G094100.1	Wheat	plastid	89.81	89.47
TraesCS1A01G403800.1	Wheat	plastid	89.43	89.1
TraesCS6A01G094300.1	Wheat	plastid	89.06	88.72
TraesCS6A01G093700.1	Wheat	plastid	88.3	87.97
TraesCS6A01G094600.1	Wheat	plastid	84.91	87.89
TraesCS7A01G237100.1	Wheat	plastid	87.17	86.84
TraesCS6A01G094500.1	Wheat	plastid	89.43	77.7
TraesCS5A01G322500.1	Wheat	plastid	74.34	74.9
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	90.57	73.39
TraesCS6A01G094400.1	Wheat	plastid	89.43	71.17
TraesCS2A01G204800.1	Wheat	plastid	68.68	67.91
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	45.66	42.01
TraesCS5A01G177700.1	Wheat	plastid	44.15	37.74
TraesCS7A01G227100.1	Wheat	plastid	35.09	37.65
TraesCS2A01G187200.1	Wheat	plastid	34.34	35.41
TraesCS6A01G319700.1	Wheat	plastid	33.21	34.65
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	29.43	31.84
TraesCS2A01G206200.1	Wheat	plastid	34.34	31.82
TraesCS5A01G213000.1	Wheat	plastid	32.45	31.5
TraesCS6A01G159800.1	Wheat	plastid	31.32	30.86
TraesCS2A01G342600.1	Wheat	plastid	28.3	29.41

Protein Annotations

EnsemblPlants:TraesCS1A01G306600.1	EnsemblPlantsGene:TraesCS1A01G306600	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:

Description

No Description!

Coordinates

chr1A:-:498596775..498597572

Molecular Weight (calculated)

28066.6 Da

IEP (calculated)

5.078

GRAVY (calculated)

0.089

Length

265 amino acids

Sequence
(BLAST)

001: MASSTMALSS PALAAKQAKI ASSNVFGEGR ITMRKTAAKA KPAASSSPWY GPDRVLYLGP LSGDAPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRVAGGP LGEIVDPLYP GGSFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIITGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.