Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G152700.1 | Wheat | golgi | 100.0 | 100.0 |
| TraesCS6B01G191500.1 | Wheat | plastid | 99.63 | 99.63 |
| Os02t0197600-01 | Rice | plastid | 87.73 | 87.73 |
| Zm00001d046786_P001 | Maize | plastid | 82.16 | 82.77 |
| KXG20345 | Sorghum | plastid | 79.93 | 81.13 |
| VIT_15s0024g00040.t01 | Wine grape | plastid | 78.81 | 77.37 |
| CDY26347 | Canola | plastid | 73.23 | 77.25 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 27.14 | 76.84 |
| PGSC0003DMT400054836 | Potato | plastid | 77.32 | 76.19 |
| GSMUA_Achr3P04110_001 | Banana | plastid | 77.32 | 75.91 |
| CDY03835 | Canola | plastid | 76.95 | 75.82 |
| CDY47581 | Canola | plastid | 76.95 | 75.82 |
| Bra031427.1-P | Field mustard | plastid | 76.95 | 75.82 |
| CDY15020 | Canola | plastid | 76.21 | 75.65 |
| Solyc10g007690.2.1 | Tomato | plastid | 76.58 | 75.46 |
| Solyc12g011280.1.1 | Tomato | plastid | 76.21 | 75.09 |
| PGSC0003DMT400020100 | Potato | plastid | 76.21 | 75.09 |
| CDY12903 | Canola | plastid | 75.46 | 74.91 |
| Bra027083.1-P | Field mustard | plastid | 75.09 | 74.54 |
| CDY57375 | Canola | plastid | 75.09 | 74.54 |
| AT1G61520.1 | Thale cress | plastid | 75.46 | 74.36 |
| KRH14048 | Soybean | nucleus, plastid | 75.09 | 73.19 |
| KRH74072 | Soybean | mitochondrion, nucleus, plastid | 75.09 | 73.19 |
| Bra038584.1-P | Field mustard | plastid | 71.38 | 66.9 |
| TraesCS2A01G187200.1 | Wheat | plastid | 39.41 | 41.25 |
| TraesCS6A01G319700.1 | Wheat | plastid | 38.29 | 40.55 |
| TraesCS5A01G229300.1 | Wheat | mitochondrion, plastid | 36.43 | 40.0 |
| TraesCS5A01G454400.1 | Wheat | mitochondrion, plastid | 23.79 | 38.32 |
| TraesCS5A01G213000.1 | Wheat | plastid | 38.29 | 37.73 |
| TraesCS7A01G227100.1 | Wheat | plastid | 32.71 | 35.63 |
| TraesCS5A01G454200.1 | Wheat | plastid | 31.97 | 32.33 |
| TraesCS7A01G276400.1 | Wheat | plastid | 30.86 | 31.92 |
| TraesCS2A01G204800.1 | Wheat | plastid | 31.6 | 31.72 |
| TraesCS5A01G350600.1 | Wheat | plastid | 31.23 | 31.7 |
| TraesCS6A01G094600.1 | Wheat | plastid | 30.11 | 31.64 |
| TraesCS7A01G238400.1 | Wheat | plastid | 31.23 | 31.58 |
| TraesCS6A01G094100.1 | Wheat | plastid | 31.23 | 31.58 |
| TraesCS1A01G306600.1 | Wheat | plastid | 30.86 | 31.32 |
| TraesCS6A01G094300.1 | Wheat | plastid | 30.86 | 31.2 |
| TraesCS6A01G093700.1 | Wheat | plastid | 30.86 | 31.2 |
| TraesCS1A01G403800.1 | Wheat | plastid | 30.86 | 31.2 |
| TraesCS5A01G454300.1 | Wheat | plastid | 30.86 | 31.2 |
| TraesCS7A01G237100.1 | Wheat | plastid | 30.86 | 31.2 |
| TraesCS1A01G403300.1 | Wheat | plastid | 30.86 | 31.2 |
| TraesCS5A01G322500.1 | Wheat | plastid | 29.74 | 30.42 |
| TraesCS4A01G226900.2 | Wheat | mitochondrion, plastid | 32.34 | 30.21 |
| TraesCS2A01G342600.1 | Wheat | plastid | 27.88 | 29.41 |
| TraesCS2A01G206200.1 | Wheat | plastid | 29.74 | 27.97 |
| TraesCS6A01G094500.1 | Wheat | plastid | 30.86 | 27.21 |
| TraesCS5A01G177700.1 | Wheat | plastid | 29.74 | 25.81 |
| TraesCS6A01G094200.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 30.48 | 25.08 |
| TraesCS6A01G094400.1 | Wheat | plastid | 30.86 | 24.92 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G159800.1 | EnsemblPlantsGene:TraesCS6A01G159800 | Gene3D:1.10.3460.10 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | InterPro:IPR023329 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF14 | PFAM:PF00504 |
| SEG:seg | SUPFAM:SSF103511 | MapMan:1.1.4.1.3 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:152060637..152061894
Molecular Weight (calculated)
29315.3 Da
IEP (calculated)
9.160
GRAVY (calculated)
-0.158
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQGLLSGR QLLGRPLQSS ISRSSSSRKS PFVVRASSSP PAKQNDNRQL WFASKQSLTY LDGTLPGDFG FDPLGLSDPE GTGGFIEPRW LAYGEIFNGR
101: TAMMGVVGMI APEALGKVGL VPPETAIPWF QAGAIPPAGT YQYWADPYTL FVFEMALIGF AEHRRLQDWY NPGSMGKQYF LGLEKYLGGS GDPAYPGGPI
201: FNPLGFGTKS EKEMKELKLK EIKNGRLAML AFLGMSLQAI FTGVGPFQNL LDHLSDPVNN NILTSLKFH
101: TAMMGVVGMI APEALGKVGL VPPETAIPWF QAGAIPPAGT YQYWADPYTL FVFEMALIGF AEHRRLQDWY NPGSMGKQYF LGLEKYLGGS GDPAYPGGPI
201: FNPLGFGTKS EKEMKELKLK EIKNGRLAML AFLGMSLQAI FTGVGPFQNL LDHLSDPVNN NILTSLKFH
001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
Arabidopsis Description
LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.