Factsheet for Os02t0197600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G159800.1	Wheat	plastid	87.73	87.73
TraesCS6D01G152700.1	Wheat	golgi	87.73	87.73
TraesCS6B01G191500.1	Wheat	plastid	87.36	87.36
Zm00001d046786_P001	Maize	plastid	82.53	83.15
KXG20345	Sorghum	plastid	79.93	81.13
GSMUA_Achr3P04110_001	Banana	plastid	79.18	77.74
PGSC0003DMT400054836	Potato	plastid	78.81	77.66
VIT_15s0024g00040.t01	Wine grape	plastid	78.81	77.37
PGSC0003DMT400020100	Potato	plastid	78.07	76.92
Solyc10g007690.2.1	Tomato	plastid	78.07	76.92
KRH14048	Soybean	nucleus, plastid	78.81	76.81
KRH74072	Soybean	mitochondrion, nucleus, plastid	78.81	76.81
CDY26347	Canola	plastid	72.49	76.47
CDY47581	Canola	plastid	77.32	76.19
CDY03835	Canola	plastid	77.32	76.19
Solyc12g011280.1.1	Tomato	plastid	77.32	76.19
Bra031427.1-P	Field mustard	plastid	77.32	76.19
CDY15020	Canola	plastid	76.58	76.01
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	26.77	75.79
AT1G61520.1	Thale cress	plastid	76.58	75.46
CDY12903	Canola	plastid	75.84	75.28
Bra027083.1-P	Field mustard	plastid	75.46	74.91
CDY57375	Canola	plastid	75.46	74.91
Bra038584.1-P	Field mustard	plastid	70.63	66.2
Os08t0435900-01	Rice	mitochondrion	38.29	42.21
Os07t0577600-01	Rice	plastid	40.52	41.44
Os02t0764500-01	Rice	plastid	39.78	41.0
Os09t0439500-01	Rice	plastid	40.15	40.91
Os06t0320500-01	Rice	plastid	33.83	37.76
Os01t0600900-02	Rice	plastid	31.6	32.57
Os07t0562700-01	Rice	extracellular, plastid	31.97	32.33
Os09t0346500-04	Rice	plastid	31.6	32.08
Os01t0720500-01	Rice	plastid	31.6	32.08
Os03t0592500-01	Rice	extracellular	30.48	31.18
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	28.62	30.56
Os11t0242800-01	Rice	plastid	30.11	28.62
Os07t0558400-01	Rice	plasma membrane, plastid	29.37	27.24
Os09t0296800-01	Rice	plastid	30.86	25.86

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	EntrezGene:4328623	EMBL:AK060143	EMBL:AK060970	EMBL:AK104096
EMBL:AK104215	EMBL:AK104348	EMBL:AK104385	EMBL:AK104392	EMBL:AK104446	EMBL:AK104458
EMBL:AK104469	EMBL:AK104522	EMBL:AK104535	EMBL:AK104557	EMBL:AK104646	EMBL:AK104734
EMBL:AK119554	ProteinID:BAD25284.1	ProteinID:BAD25451.1	ProteinID:BAS77471.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	ProteinID:EAZ22099.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EMBL:KY038500	EnsemblPlantsGene:Os02g0197600	EnsemblPlants:Os02t0197600-01
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	UniProt:Q6H748	SUPFAM:SSF103511	UniParc:UPI00003B43F6
RefSeq:XP_015625432.1	SEG:seg	:	:	:	:

Description

Chlorophyll a/b-binding protein type III (Fragment). (Os02t0197600-01);Similar to Chlorophyll a-b binding protein 8. (Os02t0197600-02);Chlorophyll a/b-binding protein type III (Fragment). (Os02t0197600-03)

Coordinates

chr2:-:5468648..5470490

Molecular Weight (calculated)

29211.2 Da

IEP (calculated)

7.801

GRAVY (calculated)

-0.035

Length

269 amino acids

Sequence
(BLAST)

001: MAAQALLSGR QLLGRPLQSS VSRSSSSRKA PFMVRAEATP PAKQGADRQL WFASKQSLSY LDGTLPGDFG FDPLGLSDPE GTGGFIEPRW LAYGEVFNGR
101: TAMMGVVGMV APELLGKLGL VPAETAIPWF QTGVIPPAGT YTYWADPYTL FVFELALVGF AEHRRFQDWY TPGSMGKQYF LGLEKYLAGS GEPAYPGGPL
201: FNPLGFGTKS EAEMKELKLK EIKNGRLAML AFLGFSVQAL FTGVGPVQNL LDHLADPVHN NILTSLKFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.