Factsheet for Os01t0600900-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 19089317

nucleus: 19621931
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

gfp PMID: 19089317 doi

CH Goh, S Jang, S Jung, HS Kim, HG Kang, YI Park, HJ Bae, CH Lee, G An

Environmental Biotechnology and Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97145	Sorghum	extracellular, vacuole	63.98	97.66
Os01t0720500-01	Rice	plastid	97.32	95.85
Os09t0346500-04	Rice	plastid	95.79	94.34
EES18693	Sorghum	plastid	94.25	92.83
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	59.39	92.81
EER97143	Sorghum	plastid	93.1	92.75
Zm00001d039040_P001	Maize	plastid	93.87	92.11
Zm00001d009589_P001	Maize	plastid	93.1	91.7
Zm00001d021435_P001	Maize	plastid	91.57	91.22
KRH08672	Soybean	mitochondrion, nucleus, plastid	89.27	88.26
KRH42317	Soybean	mitochondrion, nucleus, plastid	88.89	88.21
KRH08669	Soybean	nucleus, plastid	88.89	87.88
KRH08676	Soybean	nucleus, plastid	88.89	87.88
KRH58441	Soybean	mitochondrion, plastid	88.51	87.83
KRH70280	Soybean	plastid	73.95	77.51
Os03t0592500-01	Rice	extracellular	77.01	76.43
Os07t0562700-01	Rice	extracellular, plastid	68.58	67.29
Os11t0242800-01	Rice	plastid	45.98	42.4
Os09t0296800-01	Rice	plastid	44.44	36.14
Os06t0320500-01	Rice	plastid	32.95	35.68
Os07t0577600-01	Rice	plastid	35.63	35.36
Os09t0439500-01	Rice	plastid	34.1	33.71
Os02t0764500-01	Rice	plastid	33.33	33.33
Os07t0558400-01	Rice	plasma membrane, plastid	35.63	32.07
Os08t0435900-01	Rice	mitochondrion	29.89	31.97
Os02t0197600-01	Rice	plastid	32.57	31.6
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	27.97	28.97

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:4324599	EMBL:AK119173	EMBL:AK121563	ProteinID:BAD52990.1
ProteinID:BAF05407.1	ProteinID:BAS73022.1	ProteinID:CAA32109.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
ProteinID:EAZ44370.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	GO:GO:0046872	UniProt:I3QD41	InterPro:IPR023329	EMBL:JF969196	EnsemblPlantsGene:Os01g0600900
EnsemblPlants:Os01t0600900-02	UniProt:P12331	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	SUPFAM:SSF103511
UniParc:UPI0000446C0F	RefSeq:XP_015621226.1	SEG:seg	:	:	:

Description

CHLOROPHYLL A/B BINDING PROTEIN 2RChlorophyll a-b binding protein 2, chloroplast precursor (LHCII type I CAB-2) (LHCP). (Os01t0600900-02);Similar to Chlorophyll a-b binding protein 2, chloroplastic. (Os01t0600900-03)

Coordinates

chr1:+:23607363..23608541

Molecular Weight (calculated)

27554.0 Da

IEP (calculated)

5.085

GRAVY (calculated)

0.090

Length

261 amino acids

Sequence
(BLAST)

001: MAAATMALSS PALAGKAAAK VFGEGRITMR KSAAKPKPAA SGSPWYGADR VLYLGPLSGE PPSYLTGEFP GDYGWDTAGL SADPETFAKN RELEVIHSRW
101: AMLGALGCVF PELLARNGVK FGEAVWFKAG SQIFSEGGLD YLGNPSLIHA QSILAIWAVQ VVLMGAVEGY RIAGGPLGEV VDPLYPGGSF DPLGLADDPE
201: AFAELKVKEI KNGRLAMFSM FGFFVQAIVT GKGPLENLAD HLADPVNNNA WAYATNFVPG K

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.