Factsheet for Os04t0457000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plasma membrane: 18557835
vacuole: 18557835
nucleus: 19621931
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83967	Canola	extracellular, vacuole	8.73	95.65
Zm00001d026599_P001	Maize	plastid	84.92	86.29
OQU82564	Sorghum	plastid	87.3	86.27
Zm00001d001857_P001	Maize	plastid	85.32	84.98
TraesCS2B01G340300.1	Wheat	plastid	85.71	84.71
TraesCS2D01G320900.1	Wheat	plastid	85.71	84.71
TraesCS2A01G342600.1	Wheat	plastid	85.71	84.71
Zm00001d032051_P001	Maize	mitochondrion	29.76	83.33
GSMUA_Achr10P...	Banana	unclear	47.62	80.54
Bra026099.1-P	Field mustard	plastid	78.97	77.13
VIT_12s0055g01110.t01	Wine grape	plastid	77.78	76.26
Bra026745.1-P	Field mustard	plastid	78.17	76.06
Solyc01g105050.2.1	Tomato	plastid	76.59	75.39
KRH10515	Soybean	mitochondrion, nucleus, plastid	77.78	75.38
KRH43915	Soybean	mitochondrion, nucleus, plastid	77.78	75.1
AT1G15820.1	Thale cress	plastid	76.59	74.81
Bra016650.1-P	Field mustard	plastid	76.19	74.71
Solyc01g105030.2.1	Tomato	plastid	75.79	74.61
PGSC0003DMT400032790	Potato	plastid	75.79	74.61
PGSC0003DMT400032791	Potato	plastid	75.4	74.22
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	75.0	64.51
Zm00001d040012_P001	Maize	plastid	28.57	52.94
HORVU2Hr1G079910.1	Barley	cytosol	42.06	52.22
Os02t0764500-01	Rice	plastid	40.08	38.7
Os09t0439500-01	Rice	plastid	38.1	36.36
Os07t0577600-01	Rice	plastid	36.51	34.98
Os06t0320500-01	Rice	plastid	28.57	29.88
Os07t0558400-01	Rice	plasma membrane, plastid	34.13	29.66
Os08t0435900-01	Rice	mitochondrion	28.57	29.51
Os02t0197600-01	Rice	plastid	30.56	28.62
Os09t0346500-04	Rice	plastid	29.76	28.3
Os01t0600900-02	Rice	plastid	28.97	27.97
Os01t0720500-01	Rice	plastid	29.37	27.92
Os07t0562700-01	Rice	extracellular, plastid	28.57	27.07
Os03t0592500-01	Rice	extracellular	27.38	26.24
Os09t0296800-01	Rice	plastid	29.37	23.05
Os11t0242800-01	Rice	plastid	25.79	22.97

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	EntrezGene:4336028	EMBL:AK104811	ProteinID:BAF14883.1	ProteinID:BAS89510.1
ProteinID:CAD40888.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlantsGene:Os04g0457000
EnsemblPlants:Os04t0457000-01	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF2	UniProt:Q7XV11	SUPFAM:SSF103511
UniParc:UPI00001B1D6F	RefSeq:XP_015636811.1	SEG:seg	:	:	:

Description

light-harvesting protein CP24, PSII CP24Similar to Chlorophyll a/b-binding protein CP24, photosystem II (Fragment). (Os04t0457000-01)

Coordinates

chr4:-:22835913..22837163

Molecular Weight (calculated)

27061.5 Da

IEP (calculated)

7.673

GRAVY (calculated)

0.062

Length

252 amino acids

Sequence
(BLAST)

001: MALASTSATA SAAVLKTPFL GAKRALANAV GVAGAKPAPR RALVVSAKKS WIPAFKSDAE FINPPWLDGS LPGDFGFDPL GLGKDPAFLK WYREAELIHG
101: RWAMAAVLGI FVGQAWSGVP WFEAGAQPEA IAPFSFGSLL GTQLLLMGWV ESKRWVDFFN PDSQAVEWAT PWSRTAENFS NATGEQGYPG GKFFDPLGLG
201: GETRDGVYIP DTDKLDRLKL AEIKHARLAM LAMLIFYFEA GQGKTPLGAL GL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.