Factsheet for Zm00001d032051_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040012_P001	Maize	plastid	71.11	47.06
Zm00001d011218_P001	Maize	plastid	73.33	40.24
Zm00001d001857_P001	Maize	plastid	91.11	32.41
Zm00001d026599_P001	Maize	plastid	84.44	30.65
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	83.33	29.76
Solyc01g105050.2.1	Tomato	plastid	74.44	26.17
PGSC0003DMT400032790	Potato	plastid	72.22	25.39
Bra026099.1-P	Field mustard	plastid	72.22	25.19
AT1G15820.1	Thale cress	plastid	71.11	24.81
Solyc01g105030.2.1	Tomato	plastid	70.0	24.61
Bra016650.1-P	Field mustard	plastid	70.0	24.51
Bra026745.1-P	Field mustard	plastid	70.0	24.32
VIT_12s0055g01110.t01	Wine grape	plastid	68.89	24.12
KRH10515	Soybean	mitochondrion, nucleus, plastid	68.89	23.85
KRH43915	Soybean	mitochondrion, nucleus, plastid	68.89	23.75
PGSC0003DMT400032791	Potato	plastid	66.67	23.44
Zm00001d006592_P001	Maize	plastid	28.89	21.14
Zm00001d006663_P001	Maize	plastid	47.78	16.54
Zm00001d013766_P001	Maize	plastid	25.56	15.97
Zm00001d021906_P001	Maize	plastid	47.78	15.93
Zm00001d050403_P001	Maize	plastid	42.22	15.57
Zm00001d032197_P001	Maize	plastid	40.0	14.57
Zm00001d018157_P001	Maize	plastid	43.33	14.5
Zm00001d005814_P002	Maize	plastid	43.33	14.39
Zm00001d015385_P001	Maize	plastid	37.78	13.88
Zm00001d021763_P001	Maize	plastid	40.0	12.37
Zm00001d006587_P001	Maize	plastid	40.0	12.37
Zm00001d046786_P001	Maize	plastid	34.44	11.61
Zm00001d021435_P001	Maize	plastid	32.22	11.07
Zm00001d021784_P001	Maize	plastid	32.22	10.78
Zm00001d011285_P001	Maize	plastid	31.11	10.61
Zm00001d044402_P001	Maize	plastid	31.11	10.61
Zm00001d044401_P001	Maize	plastid	31.11	10.61
Zm00001d044399_P001	Maize	plastid	31.11	10.61
Zm00001d044396_P001	Maize	plastid	31.11	10.61
Zm00001d009589_P001	Maize	plastid	31.11	10.57
Zm00001d039040_P001	Maize	plastid	31.11	10.53
Zm00001d020002_P002	Maize	plastid	35.56	10.16
Zm00001d033136_P001	Maize	plastid	28.89	10.0
Zm00001d033132_P001	Maize	plastid	28.89	10.0
Zm00001d048998_P001	Maize	plastid	30.0	9.54
Zm00001d007267_P002	Maize	plastid	28.89	9.19
Zm00001d024372_P001	Maize	plastid	14.44	5.49

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	UniProt:A0A1D6KNA6	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	ProteinID:ONM04301.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF2	SUPFAM:SSF103511
UniParc:UPI0002216772	EnsemblPlantsGene:Zm00001d032051	EnsemblPlants:Zm00001d032051_P001	EnsemblPlants:Zm00001d032051_T001	SEG:seg	:

Description

light harvesting complex photosystem II subunit 6

Coordinates

chr1:-:210825161..210825686

Molecular Weight (calculated)

9886.1 Da

IEP (calculated)

10.562

GRAVY (calculated)

-0.031

Length

90 amino acids

Sequence
(BLAST)

1: MPPRPSPRRA LLAVAAAAAK KLWIPAFKSD AEFINPPWLD GSLPGDFGFD PLGLGKDPAF LKWYREAELI HGRWAMAAVL GIFMGQPRAK

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.