Factsheet for Zm00001d015385_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04597	Sorghum	plastid	97.55	97.55
Os06t0320500-01	Rice	plastid	92.24	93.78
TraesCS7D01G227300.1	Wheat	plastid	91.02	91.02
TraesCS7B01G192500.1	Wheat	plastid	91.02	91.02
TraesCS7A01G227100.1	Wheat	plastid	91.43	90.69
GSMUA_Achr2P06350_001	Banana	unclear	77.96	79.25
VIT_13s0019g04140.t01	Wine grape	plastid	77.96	78.28
HORVU7Hr1G046320.2	Barley	plastid	90.61	77.89
Bra003198.1-P	Field mustard	plastid	75.51	76.76
CDX67613	Canola	plastid	75.51	76.76
CDY07517	Canola	plastid	75.1	76.35
CDX73435	Canola	plastid	75.1	76.35
Bra007109.1-P	Field mustard	plastid	75.1	76.35
CDX78277	Canola	plastid	74.69	75.93
PGSC0003DMT400059995	Potato	plastid	75.92	75.61
AT3G54890.1	Thale cress	plastid	74.29	75.52
KRH08384	Soybean	nucleus, plastid	75.51	75.2
KRH70044	Soybean	mitochondrion, nucleus, plastid	75.51	75.2
PGSC0003DMT400060313	Potato	plastid	75.51	75.2
Solyc05g056050.2.1	Tomato	plastid	75.51	75.2
Solyc05g056070.2.1	Tomato	plastid	75.1	74.8
Zm00001d024372_P001	Maize	plastid	48.16	49.79
Zm00001d032051_P001	Maize	mitochondrion	13.88	37.78
Zm00001d050403_P001	Maize	plastid	37.14	37.3
Zm00001d032197_P001	Maize	plastid	36.73	36.44
Zm00001d006663_P001	Maize	plastid	37.55	35.38
Zm00001d021906_P001	Maize	plastid	37.96	34.44
Zm00001d009589_P001	Maize	plastid	36.73	33.96
Zm00001d039040_P001	Maize	plastid	36.33	33.46
Zm00001d011285_P001	Maize	plastid	35.92	33.33
Zm00001d033136_P001	Maize	plastid	35.1	33.08
Zm00001d033132_P001	Maize	plastid	35.1	33.08
Zm00001d021763_P001	Maize	plastid	39.18	32.99
Zm00001d006587_P001	Maize	plastid	39.18	32.99
Zm00001d044399_P001	Maize	plastid	35.51	32.95
Zm00001d044401_P001	Maize	plastid	35.51	32.95
Zm00001d044402_P001	Maize	plastid	35.51	32.95
Zm00001d005814_P002	Maize	plastid	36.33	32.84
Zm00001d021435_P001	Maize	plastid	35.1	32.82
Zm00001d044396_P001	Maize	plastid	35.1	32.58
Zm00001d021784_P001	Maize	plastid	34.29	31.23
Zm00001d046786_P001	Maize	plastid	33.47	30.71
Zm00001d018157_P001	Maize	plastid	32.65	29.74
Zm00001d020002_P002	Maize	plastid	37.55	29.21
Zm00001d026599_P001	Maize	plastid	28.57	28.23
Zm00001d001857_P001	Maize	plastid	28.57	27.67
Zm00001d007267_P002	Maize	plastid	31.43	27.21
Zm00001d048998_P001	Maize	plastid	31.02	26.86
Zm00001d006592_P001	Maize	plastid	12.24	24.39
Zm00001d040012_P001	Maize	plastid	12.24	22.06
Zm00001d013766_P001	Maize	plastid	12.24	20.83
Zm00001d011218_P001	Maize	plastid	12.65	18.9

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	EntrezGene:100281791	ProteinID:AQK68758.1	UniProt:B6SSN3	EMBL:BT065832
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:EU955748	EMBL:EU957966	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI000182B693	EnsemblPlantsGene:Zm00001d015385
EnsemblPlants:Zm00001d015385_P001	EnsemblPlants:Zm00001d015385_T001	:	:	:	:

Description

Chlorophyll a-b binding protein 6 chloroplastic

Coordinates

chr5:+:87654865..87656030

Molecular Weight (calculated)

26310.6 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.073

Length

245 amino acids

Sequence
(BLAST)

001: MVMASSSGLR SCSAVGVPSL LAPSSRSGRL APFCANATTS GRVTMSAEWM PGQPRPAHLD GSSPGDFGFD PLGLATVPEN FERFKESEVY HCRWAMLAVP
101: GILVPEALGL GNWVKAQEWA AVPGGQATYL GAPVPWGTLP TILVIEFVAI AFAEHQRTME KDPEKKKYPG GAFDPLGFSK DPAKFEEYKL KEIKNGRLAM
201: LAFVGFCVQQ SAYPGTGPLE NLASHLADPW HNNIGDIIIP RSISP

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.