CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70044	Soybean	mitochondrion, nucleus, plastid	97.97	97.97
GSMUA_Achr6P31940_001	Banana	plastid	86.18	87.97
GSMUA_Achr2P06350_001	Banana	unclear	84.15	85.89
Solyc05g056070.2.1	Tomato	plastid	85.37	85.37
PGSC0003DMT400060313	Potato	plastid	84.96	84.96
Solyc05g056050.2.1	Tomato	plastid	84.96	84.96
VIT_13s0019g04140.t01	Wine grape	plastid	83.74	84.43
Bra003198.1-P	Field mustard	plastid	82.11	83.82
CDY07517	Canola	plastid	82.11	83.82
CDX67613	Canola	plastid	82.11	83.82
PGSC0003DMT400059995	Potato	plastid	83.74	83.74
CDX78277	Canola	plastid	81.71	83.4
Bra007109.1-P	Field mustard	plastid	81.71	83.4
AT3G54890.1	Thale cress	plastid	81.3	82.99
CDX73435	Canola	plastid	81.3	82.99
Os06t0320500-01	Rice	plastid	74.39	75.93
EES04597	Sorghum	plastid	75.2	75.51
Zm00001d015385_P001	Maize	plastid	75.2	75.51
TraesCS7D01G227300.1	Wheat	plastid	71.95	72.24
TraesCS7B01G192500.1	Wheat	plastid	71.95	72.24
TraesCS7A01G227100.1	Wheat	plastid	71.95	71.66
HORVU7Hr1G046320.2	Barley	plastid	71.14	61.4
Zm00001d024372_P001	Maize	plastid	45.12	46.84
KRH08634	Soybean	endoplasmic reticulum	21.54	42.74
KRH54568	Soybean	nucleus, plastid	38.21	37.3
KRH63318	Soybean	plastid	37.8	36.9
KRH12566	Soybean	plastid	38.62	36.54
KRH37524	Soybean	plastid	38.62	36.54
KRH58441	Soybean	mitochondrion, plastid	38.21	35.74
KRH06319	Soybean	nucleus, plastid	39.02	35.56
KRH42317	Soybean	mitochondrion, nucleus, plastid	37.8	35.36
KRH08676	Soybean	nucleus, plastid	37.8	35.23
KRH08669	Soybean	nucleus, plastid	37.8	35.23
KRH08672	Soybean	mitochondrion, nucleus, plastid	37.8	35.23
KRH75874	Soybean	mitochondrion, nucleus, plastid	39.02	33.1
KRH65776	Soybean	nucleus, plastid	39.02	33.1
KRH22164	Soybean	nucleus, plastid	35.77	32.96
KRH27171	Soybean	mitochondrion, nucleus, plastid	35.77	32.84
KRH47742	Soybean	nucleus	37.4	32.62
KRH70280	Soybean	plastid	32.93	32.53
KRH14048	Soybean	nucleus, plastid	36.18	32.25
KRH74072	Soybean	mitochondrion, nucleus, plastid	36.18	32.25
KRH14122	Soybean	nucleus, plastid	33.33	30.94
KRH74003	Soybean	nucleus, plastid	33.33	30.94
KRH68993	Soybean	plastid	38.21	30.52
KRG97750	Soybean	plastid	33.74	29.86
KRH58296	Soybean	plastid	29.27	29.63
KRH51989	Soybean	nucleus	34.15	29.47
KRG92462	Soybean	nucleus, plastid	34.15	29.17
KRH31130	Soybean	nucleus, plastid	33.33	29.08
KRH42185	Soybean	mitochondrion, nucleus, plastid	30.49	29.07
KRH34336	Soybean	plastid	33.74	28.92
KRH43915	Soybean	mitochondrion, nucleus, plastid	30.49	28.74
KRH09238	Soybean	mitochondrion, nucleus, plastid	33.74	28.72
KRH38736	Soybean	nucleus, plastid	33.74	28.52
KRH10515	Soybean	mitochondrion, nucleus, plastid	30.08	28.46
KRH06016	Soybean	plastid	37.4	27.71
KRH17548	Soybean	cytosol, peroxisome, plastid	21.14	25.74
KRH61286	Soybean	mitochondrion	18.7	21.0
KRH58809	Soybean	mitochondrion	23.58	18.3

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	EntrezGene:100800350	EMBL:ACUP02010168	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_16G145800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	UniProt:I1MNM3	InterPro:IPR023329	EnsemblPlants:KRH08384	ProteinID:KRH08384
ProteinID:KRH08384.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI000233BD3A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:30677170..30679559

Molecular Weight (calculated)

26667.0 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.059

Length

246 amino acids

Sequence
(BLAST)

001: MAANTLMSSA ISAFPSLLSS SKSRFAAAVP LSSFVVTNAS SSRFSMSADW MPGQPRPPYL DGSAPGDFGF DPLRLGEVPE NLERFKESEL IHCRWAMLAV
101: PGILVPEALG LGNWVKAQEW AAVPGGQATY LGNPVPWGTL PTILAIEFLA ISFVEHQRSM EKDPEKKKYP GGAFDPLGYS KDPKTFHEYK VKEIKNGRLA
201: LLAFVGFCVQ QSAYPGTGPL ENLAAHLADP WHNNIGNVII PQSILP

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.