Factsheet for GSMUA_Achr6P31940_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P06350_001	Banana	unclear	93.36	93.36
KRH70044	Soybean	mitochondrion, nucleus, plastid	87.97	86.18
KRH08384	Soybean	nucleus, plastid	87.97	86.18
VIT_13s0019g04140.t01	Wine grape	plastid	87.14	86.07
PGSC0003DMT400060313	Potato	plastid	87.14	85.37
CDX73435	Canola	plastid	85.06	85.06
Bra007109.1-P	Field mustard	plastid	84.65	84.65
PGSC0003DMT400059995	Potato	plastid	86.31	84.55
Bra003198.1-P	Field mustard	plastid	84.23	84.23
CDY07517	Canola	plastid	84.23	84.23
CDX78277	Canola	plastid	84.23	84.23
CDX67613	Canola	plastid	84.23	84.23
Solyc05g056070.2.1	Tomato	plastid	85.89	84.15
AT3G54890.1	Thale cress	plastid	83.82	83.82
Solyc05g056050.2.1	Tomato	plastid	85.06	83.33
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	26.97	44.52
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	39.83	39.18
GSMUA_Achr9P02810_001	Banana	plastid	38.59	38.27
GSMUA_Achr2P14960_001	Banana	plastid	39.83	38.25
GSMUA_Achr6P20660_001	Banana	mitochondrion	31.54	37.07
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	20.33	36.84
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	20.33	36.84
GSMUA_Achr4P24090_001	Banana	unclear	36.93	35.32
GSMUA_Achr9P18200_001	Banana	plastid	19.5	34.31
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	37.34	33.71
GSMUA_Achr7P13020_001	Banana	plastid	36.1	31.99
GSMUA_Achr4P33040_001	Banana	plastid, unclear	34.85	31.82
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	32.78	31.73
GSMUA_AchrUn_...	Banana	plastid	29.88	31.17
GSMUA_Achr3P04110_001	Banana	plastid	35.27	31.02
GSMUA_Achr4P07890_001	Banana	plastid	19.92	30.19
GSMUA_Achr1P08770_001	Banana	plastid, unclear	29.05	29.05
GSMUA_Achr6P12670_001	Banana	plasma membrane	33.61	29.03
GSMUA_Achr9P27480_001	Banana	mitochondrion	38.59	28.88
GSMUA_Achr3P02780_001	Banana	plastid	34.02	28.28
GSMUA_Achr10P...	Banana	plastid	33.61	28.12
GSMUA_Achr10P...	Banana	unclear	16.18	26.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	9.54	24.21

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G31940_001
EnsemblPlants:GSMUA_Achr6P31940_001	EnsemblPlants:GSMUA_Achr6T31940_001	InterPro:IPR023329	UniProt:M0TBY9	PFAM:PF00504	PFscan:PS51257
PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI000294A33F	SEG:seg	:

Description

Chlorophyll a-b binding protein 6A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G31940_001]

Coordinates

chr6:-:31540894..31542201

Molecular Weight (calculated)

26292.6 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.065

Length

241 amino acids

Sequence
(BLAST)

001: MASSALRSCA VLFPSLLSSS KSQFVSSVAI SCTNGASRFS MSADWMPGQP RPPYLDGSAP GDFGFDPLRL GEVPENLERY KESELIHCRW AMLAVPGILV
101: PEALGLGNWV KAQEWAAIPG GQATYLGNPV PWGTLPTILV IEFFAIAFVE HQRSMEKDPE KKKYPGGAFD PLGYSKDPVK FEEYKVKEIK NGRLALLAFV
201: GFCVQQSAYP GTGPLENLAT HLADPWHNNI GDIVIPRSIL P

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.