Factsheet for GSMUA_Achr9P02810_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	54.32	90.41
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	86.01	85.31
VIT_08s0007g02190.t01	Wine grape	plastid	80.66	57.31
GSMUA_Achr2P06350_001	Banana	unclear	38.68	39.0
GSMUA_Achr6P31940_001	Banana	plastid	38.27	38.59
GSMUA_Achr6P20660_001	Banana	mitochondrion	29.63	35.12
GSMUA_Achr2P14960_001	Banana	plastid	35.8	34.66
GSMUA_Achr4P24090_001	Banana	unclear	35.39	34.13
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	18.52	33.83
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	18.52	33.83
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	37.04	33.71
GSMUA_Achr4P33040_001	Banana	plastid, unclear	35.8	32.95
GSMUA_Achr9P18200_001	Banana	plastid	18.11	32.12
GSMUA_Achr7P13020_001	Banana	plastid	34.98	31.25
GSMUA_AchrUn_...	Banana	plastid	29.22	30.74
GSMUA_Achr6P12670_001	Banana	plasma membrane	34.98	30.47
GSMUA_Achr3P02780_001	Banana	plastid	36.21	30.34
GSMUA_Achr1P08770_001	Banana	plastid, unclear	30.04	30.29
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	30.86	30.12
GSMUA_Achr10P...	Banana	plastid	34.57	29.17
GSMUA_Achr4P07890_001	Banana	plastid	18.93	28.93
GSMUA_Achr3P04110_001	Banana	plastid	32.51	28.83
GSMUA_Achr10P...	Banana	unclear	17.28	28.19
GSMUA_Achr9P27480_001	Banana	mitochondrion	35.39	26.71
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	6.58	16.84

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G02810_001
EnsemblPlants:GSMUA_Achr9P02810_001	EnsemblPlants:GSMUA_Achr9T02810_001	InterPro:IPR023329	UniProt:M0TWZ0	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI000295965A	:	:	:

Description

Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G02810_001]

Coordinates

chr9:-:1985940..1987183

Molecular Weight (calculated)

26627.1 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.020

Length

243 amino acids

Sequence
(BLAST)

001: MASTAAATSP FLGIRLRQHG VVARAVGRFQ AQFGFGKKKS LRKKVKAPTS DRPLWYPGAK APEWLDGSLV GDYGFDPFGL GKPAEYLQFR ECELIHGRWA
101: MLAILGALSV EWLTGVTWQD AGKVELVDGS SYLGLSLPFD ITALIWIEVL VIGYIEFQRN AELDPEKRLY PGGKYFDPLG LADDPEKKAS LQLAEIKHAR
201: LAMVAFLGFA VQAAATGKGP LNNWATHLSD PLHTTIFDTF SSS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.