Factsheet for GSMUA_Achr7P13020_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G299200.1	Wheat	plastid	65.44	70.08
TraesCS6B01G350500.1	Wheat	plastid	65.81	69.65
EES07574	Sorghum	plastid	68.01	69.55
Os02t0764500-01	Rice	plastid	66.18	68.97
TraesCS6A01G319700.1	Wheat	plastid	64.34	68.9
VIT_18s0001g10550.t01	Wine grape	plastid	65.07	67.05
AT1G45474.2	Thale cress	mitochondrion	62.87	66.8
Bra014048.1-P	Field mustard	mitochondrion, plastid	62.87	66.28
CDY17055	Canola	mitochondrion, plastid	62.87	66.28
Zm00001d018157_P001	Maize	plastid	65.44	66.17
Solyc07g022900.2.1	Tomato	plastid	63.6	66.03
CDY43213	Canola	mitochondrion, plastid	62.5	65.89
KRH51989	Soybean	nucleus	64.34	61.4
TraesCS6B01G312900.1	Wheat	plastid	30.88	57.93
PGSC0003DMT400011381	Potato	plastid	54.04	55.26
KRH61286	Soybean	mitochondrion	38.97	48.4
GSMUA_Achr2P14960_001	Banana	plastid	40.07	43.43
GSMUA_Achr4P24090_001	Banana	unclear	38.6	41.67
GSMUA_Achr6P20660_001	Banana	mitochondrion	31.25	41.46
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	36.76	40.16
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	18.38	37.59
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	18.38	37.59
GSMUA_Achr9P18200_001	Banana	plastid	18.75	37.23
GSMUA_Achr3P04110_001	Banana	plastid	37.5	37.23
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	19.85	36.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	12.87	36.84
GSMUA_Achr2P06350_001	Banana	unclear	32.35	36.51
GSMUA_Achr6P31940_001	Banana	plastid	31.99	36.1
GSMUA_Achr10P...	Banana	unclear	19.49	35.57
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	31.99	35.51
GSMUA_Achr9P02810_001	Banana	plastid	31.25	34.98
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	32.72	33.33
GSMUA_Achr4P33040_001	Banana	plastid, unclear	32.35	33.33
GSMUA_Achr4P07890_001	Banana	plastid	18.75	32.08
GSMUA_AchrUn_...	Banana	plastid	25.0	29.44
GSMUA_Achr10P...	Banana	plastid	30.15	28.47
GSMUA_Achr6P12670_001	Banana	plasma membrane	29.04	28.32
GSMUA_Achr3P02780_001	Banana	plastid	30.15	28.28
GSMUA_Achr1P08770_001	Banana	plastid, unclear	25.0	28.22
GSMUA_Achr9P27480_001	Banana	mitochondrion	31.25	26.4

Protein Annotations

MapMan:1.1.4.1.5	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009644	GO:GO:0009645	GO:GO:0009765	GO:GO:0009768	GO:GO:0009782
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	GO:GO:0042803	EnsemblPlantsGene:GSMUA_Achr7G13020_001	EnsemblPlants:GSMUA_Achr7P13020_001	EnsemblPlants:GSMUA_Achr7T13020_001
InterPro:IPR023329	UniProt:M0TH39	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23	SUPFAM:SSF103511
UniParc:UPI000296936E	SEG:seg	:	:	:	:

Description

Putative Chlorophyll a-b binding protein 7, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G13020_001]

Coordinates

chr7:-:10503604..10505229

Molecular Weight (calculated)

29211.2 Da

IEP (calculated)

6.726

GRAVY (calculated)

0.128

Length

272 amino acids

Sequence
(BLAST)

001: MAFAVSTTVA GIHAGEAPHA FASSSLNFPA GGRRRGPFHS TFSSRPPPRP VATRLLARAQ LQRATWLPGL DPPPHLDGTL VGDFGFDPLG LGEDPQSLKW
101: YVQAELVHCR FAMAGVAGIL VTDLLRVTGF GNIPVWFEAG AVKFEFASTE ALFVVQLLLM GFVETKRYMD FIKPGSQAQE GTFLGLEAAL EGLQPGYPGG
201: PLFNPLGLAK DIENASELKL KEIKNGRLAM VAMVGFFVQA NVTHVGPIDN LTSHLADPFK NTIIHNVFDS AS

Best Arabidopsis Sequence Match ( AT1G45474.2 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.