Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43213 | Canola | mitochondrion, plastid | 86.33 | 85.66 |
| Bra014048.1-P | Field mustard | mitochondrion, plastid | 85.94 | 85.27 |
| CDY17055 | Canola | mitochondrion, plastid | 85.55 | 84.88 |
| VIT_18s0001g10550.t01 | Wine grape | plastid | 71.48 | 69.32 |
| Solyc07g022900.2.1 | Tomato | plastid | 70.31 | 68.7 |
| KRH51989 | Soybean | nucleus | 72.27 | 64.91 |
| TraesCS6D01G299200.1 | Wheat | plastid | 64.06 | 64.57 |
| TraesCS6B01G350500.1 | Wheat | plastid | 64.06 | 63.81 |
| TraesCS6A01G319700.1 | Wheat | plastid | 63.28 | 63.78 |
| GSMUA_Achr7P13020_001 | Banana | plastid | 66.8 | 62.87 |
| Os02t0764500-01 | Rice | plastid | 63.67 | 62.45 |
| EES07574 | Sorghum | plastid | 63.67 | 61.28 |
| Zm00001d018157_P001 | Maize | plastid | 64.06 | 60.97 |
| PGSC0003DMT400011381 | Potato | plastid | 58.98 | 56.77 |
| TraesCS6B01G312900.1 | Wheat | plastid | 30.47 | 53.79 |
| KRH61286 | Soybean | mitochondrion | 44.14 | 51.6 |
| AT3G47470.1 | Thale cress | plastid | 42.97 | 43.82 |
| AT3G61470.1 | Thale cress | plastid | 39.84 | 39.69 |
| AT1G61520.1 | Thale cress | plastid | 37.89 | 35.53 |
| AT3G54890.1 | Thale cress | plastid | 32.81 | 34.85 |
| AT1G19150.1 | Thale cress | plastid | 36.72 | 34.81 |
| AT1G15820.1 | Thale cress | plastid | 33.98 | 33.72 |
| AT5G28450.1 | Thale cress | plastid | 21.48 | 31.79 |
| AT2G05070.1 | Thale cress | plastid | 31.25 | 30.19 |
| AT2G34430.1 | Thale cress | plastid | 31.25 | 30.08 |
| AT4G10340.1 | Thale cress | plastid | 32.81 | 30.0 |
| AT1G29930.1 | Thale cress | plastid | 31.25 | 29.96 |
| AT1G29920.1 | Thale cress | plastid | 31.25 | 29.96 |
| AT1G29910.1 | Thale cress | plastid | 31.25 | 29.96 |
| AT2G34420.1 | Thale cress | plastid | 30.86 | 29.81 |
| AT5G54270.1 | Thale cress | plastid | 30.47 | 29.43 |
| AT3G08940.2 | Thale cress | plastid | 32.81 | 29.27 |
| AT5G01530.1 | Thale cress | plastid | 32.81 | 28.97 |
| AT2G40100.1 | Thale cress | plastid | 28.91 | 26.81 |
| AT3G27690.2 | Thale cress | golgi, plastid | 30.86 | 26.51 |
| AT1G76570.1 | Thale cress | plastid | 32.03 | 25.08 |
| AT2G05100.2 | Thale cress | plastid | 29.3 | 23.66 |
Protein Annotations
| MapMan:1.1.4.1.5 | Gene3D:1.10.3460.10 | EntrezGene:841099 | ProteinID:AAG50618.1 | ProteinID:AEE32117.1 | ProteinID:AEE32118.1 |
| EMBL:AF134121 | EMBL:AK221694 | EMBL:AK316926 | ArrayExpress:AT1G45474 | EnsemblPlantsGene:AT1G45474 | RefSeq:AT1G45474 |
| TAIR:AT1G45474 | RefSeq:AT1G45474-TAIR-G | EnsemblPlants:AT1G45474.2 | TAIR:AT1G45474.2 | EMBL:AY062097 | EMBL:AY088144 |
| EMBL:AY090263 | Unigene:At.20798 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009409 |
| GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 |
| GO:GO:0009644 | GO:GO:0009645 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009782 | GO:GO:0009941 |
| GO:GO:0009987 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 |
| GO:GO:0018298 | GO:GO:0019538 | GO:GO:0031409 | GO:GO:0042803 | GO:GO:0046872 | InterPro:IPR023329 |
| Symbol:LHCA5 | RefSeq:NP_175137.1 | RefSeq:NP_849778.1 | PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF23 | UniProt:Q9C639 |
| SUPFAM:SSF103511 | UniParc:UPI00000A609B | SEG:seg | : | : | : |
Description
LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
Coordinates
chr1:+:17179250..17180806
Molecular Weight (calculated)
27803.6 Da
IEP (calculated)
7.257
GRAVY (calculated)
0.077
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.