Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028906.1-P | Field mustard | plastid | 93.1 | 93.75 |
| CDY04834 | Canola | plastid | 92.76 | 93.73 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 45.86 | 91.1 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 37.59 | 90.83 |
| AT3G08940.2 | Thale cress | plastid | 87.93 | 88.85 |
| Solyc09g014520.2.1 | Tomato | plastid | 84.83 | 86.32 |
| PGSC0003DMT400021871 | Potato | plastid | 83.79 | 85.26 |
| KRH65776 | Soybean | nucleus, plastid | 83.79 | 83.79 |
| KRH75874 | Soybean | mitochondrion, nucleus, plastid | 83.79 | 83.79 |
| EER99537 | Sorghum | plastid | 82.07 | 82.64 |
| Os07t0558400-01 | Rice | plasma membrane, plastid | 82.41 | 82.41 |
| TraesCS2D01G209900.1 | Wheat | plastid | 80.34 | 81.47 |
| TraesCS2B01G233400.1 | Wheat | plastid | 80.34 | 81.47 |
| TraesCS2A01G206200.1 | Wheat | plastid | 80.34 | 81.47 |
| Zm00001d021763_P001 | Maize | plastid | 81.72 | 81.44 |
| Zm00001d006587_P001 | Maize | plastid | 81.38 | 81.1 |
| AT2G40100.1 | Thale cress | plastid | 67.59 | 71.01 |
| VIT_08s0007g02190.t01 | Wine grape | plastid | 81.38 | 69.01 |
| HORVU5Hr1G013200.1 | Barley | plastid | 65.86 | 67.49 |
| AT3G54890.1 | Thale cress | plastid | 34.48 | 41.49 |
| AT3G47470.1 | Thale cress | plastid | 32.07 | 37.05 |
| AT2G34430.1 | Thale cress | plastid | 33.79 | 36.84 |
| AT2G34420.1 | Thale cress | plastid | 33.1 | 36.23 |
| AT1G29930.1 | Thale cress | plastid | 33.1 | 35.96 |
| AT1G29920.1 | Thale cress | plastid | 33.1 | 35.96 |
| AT1G29910.1 | Thale cress | plastid | 33.1 | 35.96 |
| AT3G61470.1 | Thale cress | plastid | 30.34 | 34.24 |
| AT2G05070.1 | Thale cress | plastid | 30.34 | 33.21 |
| AT1G45474.2 | Thale cress | mitochondrion | 28.97 | 32.81 |
| AT5G54270.1 | Thale cress | plastid | 29.66 | 32.45 |
| AT1G15820.1 | Thale cress | plastid | 28.62 | 32.17 |
| AT1G19150.1 | Thale cress | plastid | 29.66 | 31.85 |
| AT4G10340.1 | Thale cress | plastid | 30.34 | 31.43 |
| AT1G61520.1 | Thale cress | plastid | 28.97 | 30.77 |
| AT3G27690.2 | Thale cress | golgi, plastid | 30.0 | 29.19 |
| AT5G28450.1 | Thale cress | plastid | 17.24 | 28.9 |
| AT1G76570.1 | Thale cress | plastid | 32.41 | 28.75 |
| AT2G05100.2 | Thale cress | plastid | 27.93 | 25.55 |
Protein Annotations
| MapMan:1.1.1.1.2 | Gene3D:1.10.3460.10 | PDB:5MDX | EntrezGene:830325 | UniProt:A0A178UQ51 | ProteinID:AED90357.1 |
| EMBL:AF370474 | EMBL:AK226459 | ArrayExpress:AT5G01530 | EnsemblPlantsGene:AT5G01530 | RefSeq:AT5G01530 | TAIR:AT5G01530 |
| RefSeq:AT5G01530-TAIR-G | EnsemblPlants:AT5G01530.1 | TAIR:AT5G01530.1 | EMBL:AY048262 | EMBL:AY048300 | EMBL:AY057641 |
| EMBL:AY059861 | EMBL:AY081680 | EMBL:AY092980 | EMBL:AY133566 | EMBL:BT000363 | ProteinID:CAA50712.1 |
| ProteinID:CAB82269.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
| GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009637 |
| GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010114 | GO:GO:0010218 |
| GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 |
| GO:GO:0019538 | GO:GO:0019904 | GO:GO:0031409 | GO:GO:0046872 | InterPro:IPR023329 | Symbol:LHCB4.1 |
| RefSeq:NP_195773.1 | ProteinID:OAO95122.1 | PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000025 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0005059 | PO:PO:0005645 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF6 | UniProt:Q07473 | UniProt:Q0WW97 |
| SUPFAM:SSF103511 | UniParc:UPI00000A8704 | SEG:seg | : | : | : |
Description
LHCB4.1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q0WW97]
Coordinates
chr5:+:208866..210548
Molecular Weight (calculated)
31141.1 Da
IEP (calculated)
6.033
GRAVY (calculated)
-0.021
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATSAAAAA ASSIMGTRVA PGIHPGSGRF TAVFGFGKKK AAPKKSAKKT VTTDRPLWYP GAISPDWLDG SLVGDYGFDP FGLGKPAEYL QFDIDSLDQN
101: LAKNLAGDVI GTRTEAADAK STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS
101: LAKNLAGDVI GTRTEAADAK STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.