Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01530.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT5G01530.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT5G01530.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G206200.1 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS2B01G233400.1 | Wheat | plastid | 98.95 | 98.95 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 41.26 | 98.33 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 46.5 | 91.1 |
| Os07t0558400-01 | Rice | plasma membrane, plastid | 89.51 | 88.28 |
| Zm00001d006587_P001 | Maize | plastid | 89.16 | 87.63 |
| EER99537 | Sorghum | plastid | 88.11 | 87.5 |
| Zm00001d021763_P001 | Maize | plastid | 88.11 | 86.6 |
| Solyc09g014520.2.1 | Tomato | plastid | 83.92 | 84.21 |
| PGSC0003DMT400021871 | Potato | plastid | 83.22 | 83.51 |
| KRH65776 | Soybean | nucleus, plastid | 83.92 | 82.76 |
| KRH75874 | Soybean | mitochondrion, nucleus, plastid | 83.57 | 82.41 |
| CDY44667 | Canola | plastid | 81.82 | 81.25 |
| Bra029732.1-P | Field mustard | plastid | 81.82 | 81.25 |
| Bra028906.1-P | Field mustard | plastid | 81.47 | 80.9 |
| AT3G08940.2 | Thale cress | plastid | 81.12 | 80.84 |
| CDY04834 | Canola | plastid | 81.12 | 80.84 |
| CDY53084 | Canola | plastid | 81.47 | 80.62 |
| AT5G01530.1 | Thale cress | plastid | 81.47 | 80.34 |
| VIT_08s0007g02190.t01 | Wine grape | plastid | 81.47 | 68.13 |
| TraesCS7D01G227300.1 | Wheat | plastid | 34.27 | 40.0 |
| TraesCS2D01G200700.1 | Wheat | plastid | 33.57 | 37.65 |
| TraesCS5D01G238300.1 | Wheat | mitochondrion, plastid | 30.77 | 35.92 |
| TraesCS6D01G088700.1 | Wheat | plastid | 28.32 | 35.22 |
| TraesCS1D01G411300.1 | Wheat | plastid | 32.17 | 34.59 |
| TraesCS5D01G357600.1 | Wheat | plastid | 31.82 | 34.34 |
| TraesCS1D01G306200.1 | Wheat | plastid | 31.47 | 34.22 |
| TraesCS5D01G464700.1 | Wheat | plastid | 31.82 | 34.21 |
| TraesCS7D01G199400.1 | Wheat | plastid | 31.47 | 33.83 |
| TraesCS6D01G088800.1 | Wheat | plastid | 31.47 | 33.83 |
| TraesCS5D01G464900.1 | Wheat | plastid | 31.47 | 33.83 |
| TraesCS2D01G320900.1 | Wheat | plastid | 30.07 | 33.73 |
| TraesCS1D01G375100.1 | Wheat | plastid | 31.12 | 33.58 |
| TraesCS1D01G374900.1 | Wheat | plastid | 31.12 | 33.58 |
| TraesCS6D01G299200.1 | Wheat | plastid | 29.72 | 33.46 |
| TraesCS5D01G464800.1 | Wheat | plastid | 31.12 | 33.46 |
| TraesCS6D01G088600.1 | Wheat | plastid | 31.12 | 33.46 |
| TraesCS7D01G276300.1 | Wheat | plastid | 30.42 | 33.33 |
| TraesCS1D01G428200.1 | Wheat | plastid | 31.12 | 33.21 |
| TraesCS7D01G199500.1 | Wheat | plastid | 30.77 | 33.08 |
| TraesCS5D01G219100.1 | Wheat | plastid | 31.47 | 32.73 |
| TraesCS1D01G411600.1 | Wheat | plastid | 30.42 | 32.71 |
| TraesCS4D01G086400.1 | Wheat | plastid | 31.82 | 31.82 |
| TraesCS1D01G375000.1 | Wheat | plastid | 25.87 | 30.96 |
| TraesCS5D01G329200.1 | Wheat | plastid | 28.32 | 30.8 |
| TraesCS1D01G375200.1 | Wheat | plastid | 16.08 | 29.87 |
| TraesCS6D01G152700.1 | Wheat | golgi | 27.97 | 29.74 |
| TraesCS5D01G182000.1 | Wheat | plastid | 29.37 | 27.1 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G209900.1 | EnsemblPlantsGene:TraesCS2D01G209900 | Gene3D:1.10.3460.10 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | InterPro:IPR023329 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF6 | PFAM:PF00504 |
| SEG:seg | SUPFAM:SSF103511 | MapMan:1.1.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:165540208..165541158
Molecular Weight (calculated)
31104.0 Da
IEP (calculated)
4.861
GRAVY (calculated)
-0.107
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSVAAAAS AFLGTRLADP APQNGRIVAR FGFGKKKAPP KKAKAPPTTD RPLWFPGAQA PEYLDGTLVG DYGFDPFGLG KPAEYLQYDV DSLDQNLAQN
101: LAGEIIGTRF EDADVKSTPF QPYAEVFGLQ RFRECELIHG RWAMLATLGA LTVEWLTGVT WQDAGKVELV DGSSYLGQPL PFTLTTLIWI EVLVIGYIEF
201: QRNAELDPER RLYPGGSYFD PLGLAADPEK KETLQLAEIK HARLAMVAFL GFAVQAAATG KGPLNNWATH LSDPLHTTIF DTLGSS
101: LAGEIIGTRF EDADVKSTPF QPYAEVFGLQ RFRECELIHG RWAMLATLGA LTVEWLTGVT WQDAGKVELV DGSSYLGQPL PFTLTTLIWI EVLVIGYIEF
201: QRNAELDPER RLYPGGSYFD PLGLAADPEK KETLQLAEIK HARLAMVAFL GFAVQAAATG KGPLNNWATH LSDPLHTTIF DTLGSS
001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
Arabidopsis Description
LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.