Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G213000.1 | Wheat | plastid | 96.73 | 97.44 |
| HORVU5Hr1G062240.1 | Barley | plastid | 94.91 | 91.58 |
| TraesCS5B01G210800.2 | Wheat | cytosol, plastid | 78.18 | 90.34 |
| Os09t0439500-01 | Rice | plastid | 76.36 | 79.55 |
| Zm00001d005814_P002 | Maize | plastid | 77.82 | 78.97 |
| KXG35708 | Sorghum | plastid | 77.09 | 77.09 |
| KRH12566 | Soybean | plastid | 66.91 | 70.77 |
| KRH37524 | Soybean | plastid | 66.55 | 70.38 |
| Solyc12g009200.1.1 | Tomato | nucleus, plastid | 65.82 | 69.62 |
| VIT_11s0016g00730.t01 | Wine grape | plastid | 65.45 | 69.5 |
| PGSC0003DMT400007514 | Potato | plastid | 65.45 | 69.23 |
| CDX83783 | Canola | plastid | 63.64 | 65.79 |
| Bra016522.1-P | Field mustard | plastid | 63.27 | 65.41 |
| CDX96677 | Canola | plastid | 63.27 | 65.41 |
| AT1G19150.1 | Thale cress | plastid | 63.64 | 64.81 |
| GSMUA_Achr9P18200_001 | Banana | plastid | 30.55 | 61.31 |
| TraesCS2D01G200700.1 | Wheat | plastid | 53.45 | 57.65 |
| TraesCS5D01G238300.1 | Wheat | mitochondrion, plastid | 38.91 | 43.67 |
| TraesCS6D01G299200.1 | Wheat | plastid | 35.64 | 38.58 |
| TraesCS6D01G152700.1 | Wheat | golgi | 37.09 | 37.92 |
| TraesCS6D01G088700.1 | Wheat | plastid | 29.09 | 34.78 |
| TraesCS7D01G227300.1 | Wheat | plastid | 30.91 | 34.69 |
| TraesCS2D01G320900.1 | Wheat | plastid | 32.0 | 34.51 |
| TraesCS1D01G375100.1 | Wheat | plastid | 32.36 | 33.58 |
| TraesCS1D01G411600.1 | Wheat | plastid | 32.36 | 33.46 |
| TraesCS6D01G088800.1 | Wheat | plastid | 32.36 | 33.46 |
| TraesCS1D01G411300.1 | Wheat | plastid | 32.36 | 33.46 |
| TraesCS1D01G374900.1 | Wheat | plastid | 32.0 | 33.21 |
| TraesCS6D01G088600.1 | Wheat | plastid | 32.0 | 33.08 |
| TraesCS5D01G464700.1 | Wheat | plastid | 32.0 | 33.08 |
| TraesCS7D01G276300.1 | Wheat | plastid | 31.27 | 32.95 |
| TraesCS5D01G357600.1 | Wheat | plastid | 31.64 | 32.83 |
| TraesCS5D01G464900.1 | Wheat | plastid | 31.64 | 32.71 |
| TraesCS5D01G464800.1 | Wheat | plastid | 31.27 | 32.33 |
| TraesCS7D01G199400.1 | Wheat | plastid | 31.27 | 32.33 |
| TraesCS1D01G306200.1 | Wheat | plastid | 30.91 | 32.32 |
| TraesCS1D01G375000.1 | Wheat | plastid | 28.0 | 32.22 |
| TraesCS7D01G199500.1 | Wheat | plastid | 30.91 | 31.95 |
| TraesCS1D01G428200.1 | Wheat | plastid | 30.91 | 31.72 |
| TraesCS2D01G209900.1 | Wheat | plastid | 32.73 | 31.47 |
| TraesCS1D01G375200.1 | Wheat | plastid | 16.36 | 29.22 |
| TraesCS5D01G329200.1 | Wheat | plastid | 27.64 | 28.9 |
| TraesCS4D01G086400.1 | Wheat | plastid | 28.36 | 27.27 |
| TraesCS5D01G182000.1 | Wheat | plastid | 28.73 | 25.48 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G219100.1 | EnsemblPlantsGene:TraesCS5D01G219100 | Gene3D:1.10.3460.10 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | InterPro:IPR023329 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF5 | PFAM:PF00504 |
| SEG:seg | SUPFAM:SSF103511 | MapMan:1.1.4.1.6 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:328434165..328435303
Molecular Weight (calculated)
30251.0 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.205
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPLPTGSF SACRLQPRTR ALHATKPPVQ NAGAAAAAAA CAPVRRGGSH RTGATKSSLS TVCEPLGPDR PVWFPGTAPP PWLDGSLPGD FGFDPLGFGS
101: EPESLRWFAQ AELMHGRWAM LAAAGILVPE VLHKWGFMEE FSWYTAGERE YFADPWTLFV TQMALMGWVE GRRWMDYLNP GSVDIEPRFP NRKNPTPDVG
201: YPGGLWFDWG NWGRGSPEPV MVLRTKEIKN GRLAMLAFVG FWFQAVYTGQ GPLDNLFAHL ADPGHCNIFS AFTSH
101: EPESLRWFAQ AELMHGRWAM LAAAGILVPE VLHKWGFMEE FSWYTAGERE YFADPWTLFV TQMALMGWVE GRRWMDYLNP GSVDIEPRFP NRKNPTPDVG
201: YPGGLWFDWG NWGRGSPEPV MVLRTKEIKN GRLAMLAFVG FWFQAVYTGQ GPLDNLFAHL ADPGHCNIFS AFTSH
001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH
Arabidopsis Description
LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.