Factsheet for GSMUA_Achr9P18200_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g00730.t01	Wine grape	plastid	77.37	40.93
PGSC0003DMT400007514	Potato	plastid	73.72	38.85
Solyc12g009200.1.1	Tomato	nucleus, plastid	72.99	38.46
KRH37524	Soybean	plastid	71.53	37.69
KRH12566	Soybean	plastid	71.53	37.69
Bra016522.1-P	Field mustard	plastid	69.34	35.71
Os09t0439500-01	Rice	plastid	68.61	35.61
AT1G19150.1	Thale cress	plastid	70.07	35.56
CDX83783	Canola	plastid	68.61	35.34
CDX96677	Canola	plastid	68.61	35.34
Zm00001d005814_P002	Maize	plastid	62.77	31.73
TraesCS5A01G213000.1	Wheat	plastid	61.31	30.77
KXG35708	Sorghum	plastid	61.31	30.55
TraesCS5D01G219100.1	Wheat	plastid	61.31	30.55
TraesCS5B01G210800.2	Wheat	cytosol, plastid	52.55	30.25
GSMUA_Achr6P20660_001	Banana	mitochondrion	45.26	30.24
HORVU5Hr1G062240.1	Barley	plastid	62.04	29.82
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	45.26	24.9
GSMUA_Achr2P14960_001	Banana	plastid	39.42	21.51
GSMUA_Achr4P24090_001	Banana	unclear	38.69	21.03
GSMUA_Achr2P06350_001	Banana	unclear	35.04	19.92
GSMUA_Achr6P31940_001	Banana	plastid	34.31	19.5
GSMUA_Achr7P13020_001	Banana	plastid	37.23	18.75
GSMUA_Achr9P02810_001	Banana	plastid	32.12	18.11
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	32.12	17.96
GSMUA_Achr3P04110_001	Banana	plastid	33.58	16.79
GSMUA_AchrUn_...	Banana	plastid	27.01	16.02
GSMUA_Achr1P08770_001	Banana	plastid, unclear	27.74	15.77
GSMUA_Achr10P...	Banana	plastid	31.39	14.93
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	28.47	14.61
GSMUA_Achr6P12670_001	Banana	plasma membrane	29.2	14.34
GSMUA_Achr4P33040_001	Banana	plastid, unclear	27.01	14.02
GSMUA_Achr3P02780_001	Banana	plastid	29.2	13.79
GSMUA_Achr9P27480_001	Banana	mitochondrion	30.66	13.04
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	8.76	12.63
GSMUA_Achr4P07890_001	Banana	plastid	13.87	11.95
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	7.3	7.52
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	7.3	7.52
GSMUA_Achr10P...	Banana	unclear	7.3	6.71
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	5.11	4.79

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009765
GO:GO:0009768	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G18200_001	EnsemblPlants:GSMUA_Achr9P18200_001
EnsemblPlants:GSMUA_Achr9T18200_001	InterPro:IPR023329	UniProt:M0U1C7	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF5
SUPFAM:SSF103511	UniParc:UPI000296C694	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G18200_001]

Coordinates

chr9:+:12772704..12773628

Molecular Weight (calculated)

14739.9 Da

IEP (calculated)

7.345

GRAVY (calculated)

0.053

Length

137 amino acids

Sequence
(BLAST)

001: MALAIASSAL CSPHLRVQAS KPVPGNTRAC SRSPTRLHAT KGVSSVCQPL PPDRPLWFPG SSPPEWLDGS LPGDFGFDPL GLGSDPELLR WFAQAELMHS
101: RWAMLAVAGI LIPECLEKLG FIENFSCSQT AKIPSLM

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.