Factsheet for Bra028906.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	Bra024839.1-P	AT2G01950.1	19000166
AT5G01530.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04834	Canola	plastid	99.65	100.0
Bra029732.1-P	Field mustard	plastid	94.1	94.1
AT5G01530.1	Thale cress	plastid	93.75	93.1
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	46.53	91.78
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	37.5	90.0
Solyc09g014520.2.1	Tomato	plastid	85.42	86.32
PGSC0003DMT400021871	Potato	plastid	84.38	85.26
KRH75874	Soybean	mitochondrion, nucleus, plastid	85.76	85.17
KRH65776	Soybean	nucleus, plastid	85.76	85.17
Os07t0558400-01	Rice	plasma membrane, plastid	83.33	82.76
EER99537	Sorghum	plastid	81.94	81.94
TraesCS2D01G209900.1	Wheat	plastid	80.9	81.47
TraesCS2B01G233400.1	Wheat	plastid	80.9	81.47
TraesCS2A01G206200.1	Wheat	plastid	80.9	81.47
Zm00001d021763_P001	Maize	plastid	81.94	81.1
Zm00001d006587_P001	Maize	plastid	81.25	80.41
Bra004989.1-P	Field mustard	plastid	67.01	69.93
VIT_08s0007g02190.t01	Wine grape	plastid	82.29	69.3
HORVU5Hr1G013200.1	Barley	plastid	67.71	68.9
Bra003198.1-P	Field mustard	plastid	34.72	41.49
Bra007109.1-P	Field mustard	plastid	34.72	41.49
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	22.57	40.37
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	22.57	40.37
Bra022976.1-P	Field mustard	plastid	33.68	36.47
Bra030181.1-P	Field mustard	plastid	33.68	36.33
Bra030182.1-P	Field mustard	plastid	33.68	36.33
Bra005425.1-P	Field mustard	plastid	33.33	36.09
Bra010807.1-P	Field mustard	plastid	33.33	35.96
Bra018144.1-P	Field mustard	plastid	31.25	35.71
Bra013183.1-P	Field mustard	plastid	30.56	33.21
Bra003451.1-P	Field mustard	plastid	29.86	33.2
Bra026745.1-P	Field mustard	plastid	29.86	33.2
Bra014433.1-P	Field mustard	plastid	29.51	33.2
Bra033022.1-P	Field mustard	plastid	29.51	32.95
Bra016522.1-P	Field mustard	plastid	30.21	32.71
Bra026099.1-P	Field mustard	plastid	29.17	32.56
Bra039070.1-P	Field mustard	plastid	29.86	32.45
Bra025297.1-P	Field mustard	plastid	29.86	32.33
Bra016650.1-P	Field mustard	plastid	28.82	32.3
Bra014048.1-P	Field mustard	mitochondrion, plastid	28.82	32.17
Bra002999.1-P	Field mustard	plastid	29.51	32.08
Bra027083.1-P	Field mustard	plastid	29.51	31.37
Bra000708.1-P	Field mustard	plastid	29.86	30.71
Bra031427.1-P	Field mustard	plastid	28.47	30.04
Bra037913.1-P	Field mustard	plastid	29.17	29.89
Bra008265.1-P	Field mustard	plastid	30.56	27.16
Bra038584.1-P	Field mustard	plastid	26.04	26.13

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra028906	EnsemblPlants:Bra028906.1	EnsemblPlants:Bra028906.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009765	GO:GO:0009987
GO:GO:0010114	GO:GO:0010218	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0019904	InterPro:IPR023329	UniProt:M4EJE0
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI00025435CB	SEG:seg

Description

AT5G01530 (E=2e-142) | chlorophyll A-B binding protein CP29 (LHCB4)

Coordinates

chrA02:-:1490234..1491274

Molecular Weight (calculated)

31215.3 Da

IEP (calculated)

5.730

GRAVY (calculated)

-0.082

Length

288 amino acids

Sequence
(BLAST)

001: MAATPTAAAA SSIMGTRVVP DINSGSGRIT ARFGFGKKKA APKKTKTVVT TDRPLWYPGA KSPEWLDGSL VGDYGFDPFG LGKPAEYLQF DIDSLDQNLA
101: KNLAGDVIGT RTEEAAPKST PFQPYSEVFG IQRFRECELI HGRWAMLATL GALSVEWLTG VTWQDAGKVE LVDGSSYLGQ PLPFSISTLI WIEVLVIGYI
201: EFQRNAELDS EKRLYPGGKF FDPLGLASDP EKMAQLQLAE IKHARLAMVA FLGFAVQAAA TGKGPLNNWA THLSDPLHTT IIDTFSSS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.