Factsheet for Bra003198.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67613	Canola	plastid	100.0	100.0
CDY07517	Canola	plastid	99.17	99.17
Bra007109.1-P	Field mustard	plastid	99.17	99.17
AT3G54890.1	Thale cress	plastid	97.51	97.51
VIT_13s0019g04140.t01	Wine grape	plastid	85.48	84.43
GSMUA_Achr6P31940_001	Banana	plastid	84.23	84.23
PGSC0003DMT400060313	Potato	plastid	85.89	84.15
GSMUA_Achr2P06350_001	Banana	unclear	83.82	83.82
Solyc05g056070.2.1	Tomato	plastid	85.48	83.74
Solyc05g056050.2.1	Tomato	plastid	85.06	83.33
PGSC0003DMT400059995	Potato	plastid	85.06	83.33
KRH08384	Soybean	nucleus, plastid	83.82	82.11
KRH70044	Soybean	mitochondrion, nucleus, plastid	83.4	81.71
Os06t0320500-01	Rice	plastid	75.93	75.93
TraesCS7B01G192500.1	Wheat	plastid	77.18	75.92
EES04597	Sorghum	plastid	77.18	75.92
TraesCS7D01G227300.1	Wheat	plastid	77.18	75.92
Zm00001d015385_P001	Maize	plastid	76.76	75.51
TraesCS7A01G227100.1	Wheat	plastid	77.18	75.3
HORVU7Hr1G046320.2	Barley	plastid	76.35	64.56
Zm00001d024372_P001	Maize	plastid	45.23	45.99
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	27.39	40.99
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	27.39	40.99
Bra003451.1-P	Field mustard	plastid	39.83	37.07
Bra014433.1-P	Field mustard	plastid	39.0	36.72
Bra010807.1-P	Field mustard	plastid	40.25	36.33
Bra030181.1-P	Field mustard	plastid	40.25	36.33
Bra022976.1-P	Field mustard	plastid	39.83	36.09
Bra030182.1-P	Field mustard	plastid	39.83	35.96
Bra029732.1-P	Field mustard	plastid	42.74	35.76
Bra005425.1-P	Field mustard	plastid	39.42	35.71
Bra018144.1-P	Field mustard	plastid	37.34	35.71
Bra028906.1-P	Field mustard	plastid	41.49	34.72
Bra016522.1-P	Field mustard	plastid	36.93	33.46
Bra004989.1-P	Field mustard	plastid	37.76	32.97
Bra016650.1-P	Field mustard	plastid	34.44	32.3
Bra026099.1-P	Field mustard	plastid	34.44	32.17
Bra014048.1-P	Field mustard	mitochondrion, plastid	34.44	32.17
Bra002999.1-P	Field mustard	plastid	35.27	32.08
Bra013183.1-P	Field mustard	plastid	35.27	32.08
Bra033022.1-P	Field mustard	plastid	34.02	31.78
Bra039070.1-P	Field mustard	plastid	34.85	31.7
Bra025297.1-P	Field mustard	plastid	34.85	31.58
Bra026745.1-P	Field mustard	plastid	33.61	31.27
Bra031427.1-P	Field mustard	plastid	34.85	30.77
Bra027083.1-P	Field mustard	plastid	34.44	30.63
Bra000708.1-P	Field mustard	plastid	34.02	29.29
Bra037913.1-P	Field mustard	plastid	32.78	28.11
Bra038584.1-P	Field mustard	plastid	33.2	27.87
Bra008265.1-P	Field mustard	plastid	36.51	27.16

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra003198	EnsemblPlants:Bra003198.1	EnsemblPlants:Bra003198.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4CG65	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI0002541443	SEG:seg	:	:

Description

AT3G54890 (E=5e-135) LHCA1 | LHCA1; chlorophyll binding

Coordinates

chrA07:-:11821268..11822605

Molecular Weight (calculated)

26041.4 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.098

Length

241 amino acids

Sequence
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RVRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPENL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA VPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKFEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH KNIGDIVIPL N

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.