Factsheet for Bra022976.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra003782.1-P
Bra004709.1-P
Bra005827.1-P
Bra011734.1-P
Bra015885.1-P
Bra018126.1-P
Bra032697.1-P
Bra034882.1-P
Bra037607.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29910.1	Bra003782.1-P	AT1G74890.1	18642946
AT1G29910.1	Bra015885.1-P	AT1G74890.1	18642946
AT1G29910.1	Bra018126.1-P	AT3G47620.1	21798944
AT1G29920.1	Bra003782.1-P	AT1G74890.1	18642946
AT1G29920.1	Bra015885.1-P	AT1G74890.1	18642946
AT1G29920.1	Bra037607.1-P	AT3G44880.1	22366162
AT1G29920.1	Bra032697.1-P	AT4G13250.1	22366162
AT1G29920.1	Bra034882.1-P	AT4G13250.1	22366162
AT1G29920.1	Bra011734.1-P	AT4G37000.1	22366162
AT1G29920.1	Bra005827.1-P	AT5G04900.1	22366162
AT1G29930.1	Bra000267.1-P	AT2G42580.1	19000166
AT1G29930.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	60.53	100.0
CDX84647	Canola	plastid	99.62	99.62
CDX79562	Canola	plastid	99.25	99.25
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	59.77	98.76
Bra005425.1-P	Field mustard	plastid	97.74	97.74
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	48.12	96.24
AT2G34430.1	Thale cress	plastid	95.86	95.86
AT1G29930.1	Thale cress	plastid	95.86	95.51
Bra030182.1-P	Field mustard	plastid	95.86	95.51
Bra010807.1-P	Field mustard	plastid	95.86	95.51
AT2G34420.1	Thale cress	plastid	95.11	95.47
AT1G29920.1	Thale cress	plastid	95.49	95.13
Bra030181.1-P	Field mustard	plastid	95.49	95.13
AT1G29910.1	Thale cress	plastid	95.49	95.13
Bra013183.1-P	Field mustard	plastid	75.56	75.85
Bra039070.1-P	Field mustard	plastid	74.81	75.09
Bra025297.1-P	Field mustard	plastid	74.81	74.81
Bra033022.1-P	Field mustard	plastid	71.43	73.64
Bra002999.1-P	Field mustard	plastid	68.05	68.3
Bra037913.1-P	Field mustard	plastid	43.23	40.93
Bra000708.1-P	Field mustard	plastid	42.48	40.36
Bra007109.1-P	Field mustard	plastid	36.09	39.83
Bra003198.1-P	Field mustard	plastid	36.09	39.83
Bra014433.1-P	Field mustard	plastid	34.96	36.33
Bra003451.1-P	Field mustard	plastid	34.21	35.14
Bra008265.1-P	Field mustard	plastid	42.11	34.57
Bra029732.1-P	Field mustard	plastid	36.84	34.03
Bra028906.1-P	Field mustard	plastid	36.47	33.68
Bra027083.1-P	Field mustard	plastid	33.83	33.21
Bra018144.1-P	Field mustard	plastid	31.2	32.94
Bra016522.1-P	Field mustard	plastid	32.71	32.71
Bra031427.1-P	Field mustard	plastid	33.08	32.23
Bra004989.1-P	Field mustard	plastid	32.71	31.52
Bra026745.1-P	Field mustard	plastid	29.7	30.5
Bra014048.1-P	Field mustard	mitochondrion, plastid	28.95	29.84
Bra026099.1-P	Field mustard	plastid	28.57	29.46
Bra016650.1-P	Field mustard	plastid	28.2	29.18
Bra038584.1-P	Field mustard	plastid	30.45	28.22

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra022976	EnsemblPlants:Bra022976.1	EnsemblPlants:Bra022976.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4E2H5	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF55	SUPFAM:SSF103511	UniParc:UPI000253FDAB	:	:	:

Description

AT2G34430 (E=4e-150) LHB1B1, LHCB1.4 | LHB1B1; chlorophyll binding

Coordinates

chrA03:-:8044232..8045032

Molecular Weight (calculated)

28219.6 Da

IEP (calculated)

4.793

GRAVY (calculated)

0.026

Length

266 amino acids

Sequence
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPGASEVFGT GRVTMRKTVK PTGPSGSPWY GSDRVNYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGEG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK

Best Arabidopsis Sequence Match ( AT2G34430.1 )
(BLAST)

001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK

Arabidopsis Description

LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.